Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52310 704 / 0 protein kinase family protein / C-type lectin domain-containing protein (.1) AT3G15890 215 / 1e-64 Protein kinase superfamily protein (.1) AT3G09010 215 / 3e-64 Protein kinase superfamily protein (.1) AT5G02800 213 / 1e-63 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G61860 212 / 3e-63 Protein kinase superfamily protein (.1) AT2G28590 210 / 4e-62 Protein kinase superfamily protein (.1) AT1G16670 208 / 7e-62 Protein kinase superfamily protein (.1) AT1G52540 205 / 3e-61 Protein kinase superfamily protein (.1) AT1G68690 214 / 4e-61 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT4G01330 209 / 5e-61 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049600 [exp] 216 / 3e-65 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 216 / 5e-65 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 216 / 7e-65 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 214 / 8e-64 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 213 / 1e-63 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 211 / 4e-63 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 219 / 6e-63 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 215 / 2e-62 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 215 / 2e-62 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040381 [exp] 763 / 0 AT1G52310 657 / 0.0 protein kinase family protein / C-type lectin domain-containing protein (.1) Lus10023500 [exp] 757 / 0 AT1G52310 647 / 0.0 protein kinase family protein / C-type lectin domain-containing protein (.1) Lus10011148 [exp] 222 / 5e-67 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10011490 [exp] 221 / 7e-67 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10043050 [exp] 220 / 2e-66 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 218 / 1e-65 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10014019 [exp] 216 / 4e-64 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 213 / 5e-64 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10019621 [exp] 213 / 1e-63 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10011098 [exp] 216 / 3e-62 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0056 [poplar] [flax] C_Lectin PF00059 [poplar] [flax] Lectin_C Lectin C-type domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G160300.2 pacid=42792251 polypeptide=Potri.001G160300.2.p locus=Potri.001G160300 ID=Potri.001G160300.2.v4.1 annot-version=v4.1 ATGAAACTGATCTGCCTGCAGTTTGCTGTGATTTTGATTACTTTTGTTGGCCTTGTGGCATCTCAAACTACATCAAAAAATGAGACGATTCAGGTCCAAT TGGTGGCTTCCAACAATCAAACCAGCAGAGCATGGTGCCCTTCTGGATGGGCTATAAGTCCAAATAAGAGTAAGTGCTTCAAACTTATACGGAGATTCAA GTCATGGAATGAATCAGAGAACCGTTGTATGCGTTATGGTGGACACGTGGCAGGACTGACATCATCTGAAGAACTTAGCTTTGCTCAGAAGTTGTGTGGC CAAACTGCCAATGGCTGTTGGGCTGGTGGAAGAGTGATGAATTCTACTATAGGTTTCATTTGGAAGTGGTCCGATAGCACTTCACACATGAACCAGTCAA TAGTTCCTGAGCCTTTTCCTTTGAATTGCACTAGTTTGTCATGCCGCAATAGTATTGCAGCTGATTTATGTACAGTGGTGAATGGAACTGCCGATCTTGT GGCTGAGAGATGCAATAGTTCTCATGCTTTTATTTGCATGCTTGATGTTGAGAAGAAATGCTACCACATGCACTGCCACCGGGAATATCTGATTATCCTT GCAGTTGTGAGTGGATTAATCCTTTGCACAACATTAGCAGTTGTGATTTGGCTCCTTGCATACAGGCGAAGCAAGAAGCGTAGAAAGTCTCGTAAGTTAT CCAATCCAGCAGCTTCTGCATTGGTTCCTCCATCATGGAAAGTATTCACTAATGAGGAACTGAGGTCGATTACCAAGAATTTTAGTGAAGGAAATCGTCT TCTTGGAGATGCAAAAACTGGTGGCACATATAGTGGTTTTCTTCCTGATGGATCTAGGGTGGCGGTTAAGAGGTTAAAAAGGTCTAGTTTCCAGAGGAAG AAGGAGTTTTACTCTGAAATTGGAAGGGTTGCCAGGCTCCACCATCCAAACTTGGTGGCTATTAAGGGATGTTGTTATGATCATGGTGACCGCTACATTG TTTATGAGTTTATACTTAATGGGCCCTTGGATAGATGGCTTCACCATGTGCCAAGAGGAGGCAGGAGCTTGGACTGGGCTATGAGGATGAAAATCGCTAC AACGCTTGCCCAAGGAATTGCGTTCTTGCATGACAAGGTTAAGCCTCATGTTGTGCATCGGGATATTCGTGCTAGTAGTGTTCTGCTGGATGAAGAGTTC GGAGCCCATTTAATGGGGGTTGGTCTTTCCAAGTTTATGCCATGGGAAGTGATGCATGAGAGAACAATGATGGCAGGTGGCACATATGGGTACCTTGCTC CAGAATTTGTTTACAGAAATGAACTTACTACAAAGAGTGATGTCTACAGCTTTGGGGTGCTGCTTCTTGAAATAGTCAGTGGGCGTAGGCCTATGCAAGC AGTTGATTCGGTGGGTTGGCAGAGTATATTTGAGTGGGCCACTCCTCTGGTGCAGGCGCACCGCTACCCTGAGCTCTTGGATCCTCTCATAACCCCACCC TCCTCGGATGTTCCAGAAGCTGGAGTCATTCAGAAGGTTGTGGACCTTGTATATGCTTGCACGCAGCATGTGCCATCAATGCGCCCAAGAATGTCTCACG TTGTTCATCAGCTACAACAGTTGGCACAGCCATGA
AA sequence Show only first row Show all	>Potri.001G160300.2 pacid=42792251 polypeptide=Potri.001G160300.2.p locus=Potri.001G160300 ID=Potri.001G160300.2.v4.1 annot-version=v4.1 MKLICLQFAVILITFVGLVASQTTSKNETIQVQLVASNNQTSRAWCPSGWAISPNKSKCFKLIRRFKSWNESENRCMRYGGHVAGLTSSEELSFAQKLCG QTANGCWAGGRVMNSTIGFIWKWSDSTSHMNQSIVPEPFPLNCTSLSCRNSIAADLCTVVNGTADLVAERCNSSHAFICMLDVEKKCYHMHCHREYLIIL AVVSGLILCTTLAVVIWLLAYRRSKKRRKSRKLSNPAASALVPPSWKVFTNEELRSITKNFSEGNRLLGDAKTGGTYSGFLPDGSRVAVKRLKRSSFQRK KEFYSEIGRVARLHHPNLVAIKGCCYDHGDRYIVYEFILNGPLDRWLHHVPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASSVLLDEEF GAHLMGVGLSKFMPWEVMHERTMMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPMQAVDSVGWQSIFEWATPLVQAHRYPELLDPLITPP SSDVPEAGVIQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52310			protein kinase family protein ...		Potri.001G160300 [exp]	0	1
AT2G35680			Phosphotyrosine protein phosph...		Potri.002G136700 [exp]	6.00	0.6925
AT2G04940			scramblase-related (.1)		Potri.015G079500 [exp]	12.96	0.7162
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.006G240200 [exp]	15.36	0.7195
AT3G26370			O-fucosyltransferase family pr...		Potri.010G048500 [exp]	28.98	0.6840
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.015G079900 [exp]	29.39	0.6838
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Potri.015G034600 [exp]	35.56	0.6879	ATLCB1.2
AT5G19760			Mitochondrial substrate carrie...		Potri.003G220400 [exp]	42.42	0.6681
AT1G30540			Actin-like ATPase superfamily ...		Potri.001G466900 [exp]	56.08	0.6249
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.011G004700 [exp]	60.33	0.6423
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G155700 [exp]	64.80	0.6510

Compare expression of checked genes

Potri.001G160300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.