Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SETH1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34980 357 / 4e-124 SETH1 phosphatidylinositolglycan synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074300 [exp] 491 / 3e-177 AT2G34980 383 / 2e-134 phosphatidylinositolglycan synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009915 [exp] 400 / 3e-141 AT2G34980 383 / 2e-134 phosphatidylinositolglycan synthase family protein (.1) Lus10024198 [exp] 397 / 4e-140 AT2G34980 380 / 2e-133 phosphatidylinositolglycan synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06432 [poplar] [flax] GPI2 Phosphatidylinositol N-acetylglucosaminyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G160600.1 pacid=42788195 polypeptide=Potri.001G160600.1.p locus=Potri.001G160600 ID=Potri.001G160600.1.v4.1 annot-version=v4.1 ATGGATAGCATCATCAGCGAGAGTCCGCTGCATCCCAAGTGGAGGAAAGTTGCTTATGGAGGAATGCAGCCTGAGTTTGATGACAATCACACTGATGAGT CTTTTCTTGAAGATATGGTCATGAATGCTAATGTTGTTAAGCGGGACATGCTAAAGGTGATGCAGGACTCAGTTTCTATCTCTCAGTATCTGTGCATTGT TGCTCTTGTCGGCTTGGTGTGGGCTCACACCCTTCAATCAACCCTTGATGAAAATTCGCTCTTGCTCCTAGATGCTAGCCTTTTCGGATCAGGTTTTTTA GTTCTGCTTTTAACCAAAGAAATGCGTTCCTTGAATCTTCTCTTCTATTATATCCTCAATATATCCTTTTTCACAACTGGGTTATATATGTTGGCTCCTA TTTATCACACTCTCACAAGATCCATAAGCTCAGACTCCATTTGGGCAGTAACTGTTTCGCTTGTTGTACTTCATCTTTTCCTGCATGACTATTCAGGATC GACCATTAAAGCTCCTGTGGCCCTAAAAAATCCAAGCTTAACCAGCTGTGTCTCTTTAAATGCTTCTGTAGTTGCTTCAGTTTTTATTGCATCTCGCCTT CCATCAAGGCTGCATGTATTTGCCATCATGCTATTTTCCTTGCAAGTCTTCCTTTTTGCTCCATTTGTCACTTACTGTATCAAGAAATTCTCCTTCCACT TGCACCTTCTGTTTTCCTTTGGGTTGATGGTTGTGACCCTGGCTTTGGTTTATACACTGCACCACCTACTTTTCATGCTACTGTTTGGTTTATTGTTGTT TATAAGCATTATCTGTCCTTATTGGCTCATAAGAATTCAGGAATACAAGTTTGAGATCAATGGTCCTTGGGATGAGGCTAAGCTTTGTTTCAATGTAACA GATTGA
AA sequence Show only first row Show all	>Potri.001G160600.1 pacid=42788195 polypeptide=Potri.001G160600.1.p locus=Potri.001G160600 ID=Potri.001G160600.1.v4.1 annot-version=v4.1 MDSIISESPLHPKWRKVAYGGMQPEFDDNHTDESFLEDMVMNANVVKRDMLKVMQDSVSISQYLCIVALVGLVWAHTLQSTLDENSLLLLDASLFGSGFL VLLLTKEMRSLNLLFYYILNISFFTTGLYMLAPIYHTLTRSISSDSIWAVTVSLVVLHLFLHDYSGSTIKAPVALKNPSLTSCVSLNASVVASVFIASRL PSRLHVFAIMLFSLQVFLFAPFVTYCIKKFSFHLHLLFSFGLMVVTLALVYTLHHLLFMLLFGLLLFISIICPYWLIRIQEYKFEINGPWDEAKLCFNVT D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Potri.001G160600 [exp]	0	1	SETH1.2
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.005G163900 [exp]	4.69	0.8621
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	28.82	0.8584
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	34.29	0.8491	Pt-SAH7.2
AT2G32980			unknown protein		Potri.002G225100 [exp]	43.16	0.8298
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	48.74	0.8006
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.004G189900 [exp]	52.39	0.7881	AXS1.2
AT3G50860			Clathrin adaptor complex small...		Potri.007G025400 [exp]	53.98	0.8175
AT5G24170			Got1/Sft2-like vescicle transp...		Potri.012G012700 [exp]	57.16	0.8340
AT1G71820		SEC6	SEC6 (.1.2)		Potri.019G088100 [exp]	60.52	0.8001
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.001G302100 [exp]	73.72	0.8194

Compare expression of checked genes

Potri.001G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.