Plant FIBer expression Database

Potri.001G160700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30970 347 / 4e-117 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G074200
[exp]
563 / 0 AT1G30970 392 / 8e-135 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036234
[exp]
383 / 4e-131 AT1G30970 430 / 1e-150 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Lus10038373
[exp]
382 / 9e-131 AT1G30970 430 / 1e-150 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
PFAM info
Representative CDS sequence
>Potri.001G160700.1 pacid=42793092 polypeptide=Potri.001G160700.1.p locus=Potri.001G160700 ID=Potri.001G160700.1.v4.1 annot-version=v4.1
ATGGGAAAGAAGAAGAAGAGAGTATCGTCAAAAGTTTGGTGCTATTACTGCGATAGGGAATTCGATGACGAGAAGATTCTAGTACAGCACCAAAAAGCGA
AGCACTTTAAGTGCCATGTCTGCCACAAAAAGCTATCCACTGCTGGTGGCATGGCCATTCACGTTCTCCAGGTCCACAAAGAGTCCGTCACCAAGGTTCC
CAATGCAAAACCTGGAAGAGAATCAACTGATATTGAAATATATGGAATGCAAGGAATCCCACCTGATGTCTTGGCGTCTCACTATGGAGATGACGAAGAT
GAGACTCCATCAAAAGCTGCTAAAGGGGATATTCCATCAGCTCAGCGTATTGGTGGTATGATGCCAGGACCATTGAGCACTGGATATCCTCCACAACCTC
TTGGTGCAATGCAGCCAATGTATAATTCTGCTGTTCCAGTTCCTCCTGCTGGTTGGCCAGTTCCTCCCCGTCCACAGCCTTGGTTCCCAACGCATCCTGC
TGTTTCAATCTCTCCTTCTGCCCCAATTGCATATGCCCAGCAGCCACTGTTTCCTGTGCAAAATATGAGGCCTCCTGTGCCATCAACTACATCAATTGCA
CTCCCACCTTCACAAACACCCCCTCCTGGACTGCCCTCATCCACACCACCTGTATCACAACCATTGTTCCCTGTTGTCAACAATAATTTGCCTCAAAGTT
CACCATTTTCTGCTCCTTTGCCTCCAACAAGTATTTCTTCGAGCTCTCCTGGAGAAGTTAAAGGTTCAGTGAATGTGCATTCGGGAGTCAATAGTTCCAT
GACAACTGGCTACCTTCCAGCTGGGACATTAGGCAACACACATTCTTATGCCTCTGGTCCAAATACCGGCGGCCCTTCTATTGGACCGCCCCCTGTAATT
GCAAACAAGGCTCCTGCCACGCAGACAGCTGTTAACGAAGTCTATCTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTACCAA
AGTATCAGGTGCATGATGAAACTAGCCAGGTAAGTTATGACTACCTCTTTAGTATTTGGAGTTGGTTTGCACATCTAACCAGATGGGTAGGCTTTATGCT
TTTTGTTTTCAGATACAGTTGTTTATGCATTGTTACCTATTTAGAGAGGTATTTCTGTATGAATTTTCAATTTTTATTTTTCTTAACTCATCAACAAACC
CACAGTTATAGCTATGTGTTTAGTCAAGCGTCTCTAGACTTCAATGTCCACTTCCTGGTGGTCATGCTGTTTGTGTTTTTTTTTCCCACAATTCTGTGGT
TTGCATGCCAATGCCATGATGGCAGTTGA
AA sequence
>Potri.001G160700.1 pacid=42793092 polypeptide=Potri.001G160700.1.p locus=Potri.001G160700 ID=Potri.001G160700.1.v4.1 annot-version=v4.1
MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLASHYGDDED
ETPSKAAKGDIPSAQRIGGMMPGPLSTGYPPQPLGAMQPMYNSAVPVPPAGWPVPPRPQPWFPTHPAVSISPSAPIAYAQQPLFPVQNMRPPVPSTTSIA
LPPSQTPPPGLPSSTPPVSQPLFPVVNNNLPQSSPFSAPLPPTSISSSSPGEVKGSVNVHSGVNSSMTTGYLPAGTLGNTHSYASGPNTGGPSIGPPPVI
ANKAPATQTAVNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQVSYDYLFSIWSWFAHLTRWVGFMLFVFRYSCLCIVTYLERYFCMNFQFLFFLTHQQT
HSYSYVFSQASLDFNVHFLVVMLFVFFFPTILWFACQCHDGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.001G160700
[exp]
0 1
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.003G074200
[exp]
2.23 0.8438
AT3G25680 unknown protein Potri.010G131000
[exp]
4.24 0.6947
AT5G49530 SIN-like family protein (.1) Potri.007G028600
[exp]
7.34 0.7472
AT1G20760 Calcium-binding EF hand family... Potri.007G063200
[exp]
8.83 0.7761
AT5G15380 DRM1 domains rearranged methylase 1... Potri.001G347000
[exp]
9.16 0.6877
AT2G42240 RNA-binding (RRM/RBD/RNP motif... Potri.007G046600
[exp]
9.16 0.6865
AT5G15270 RNA-binding KH domain-containi... Potri.017G085500
[exp]
9.16 0.6595
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Potri.005G071600
[exp]
9.74 0.7321
AT2G30530 unknown protein Potri.013G160100
[exp]
14.14 0.6951
AT4G11270 Transducin/WD40 repeat-like su... Potri.001G098700
[exp]
14.49 0.6742

Potri.001G160700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.