Plant FIBer expression Database

Pt-ERG.1 (Potri.001G160800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ERG.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30960 492 / 3e-173 GTP-binding family protein (.1)
AT5G66470 89 / 5e-19 RNA binding;GTP binding (.1)
AT1G78010 44 / 0.0003 tRNA modification GTPase, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G021900
[exp]
96 / 2e-21 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023046
[exp]
493 / 1e-173 AT1G30960 499 / 5e-176 GTP-binding family protein (.1)
Lus10032427
[exp]
484 / 6e-170 AT1G30960 489 / 1e-171 GTP-binding family protein (.1)
Lus10014289
[exp]
94 / 1e-20 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1)
Lus10025995
[exp]
62 / 4e-10 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Lus10029578
[exp]
44 / 0.0003 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1)
Lus10006309
[exp]
42 / 0.001 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01926 MMR_HSR1 50S ribosome-binding GTPase
CL0007 KH PF07650 KH_2 KH domain
Representative CDS sequence
>Potri.001G160800.1 pacid=42788063 polypeptide=Potri.001G160800.1.p locus=Potri.001G160800 ID=Potri.001G160800.1.v4.1 annot-version=v4.1
ATGAAATCATTGAGAGCACTGAGAATCGCCAGCACCCTTGCTTCAAAGCCACCTCCCTTTGTCTACACTAACCAAAACCTCCTCTCTCATTTCTTCTCAG
CCCAACCTGACCAAAACGAGAGTGAAAATGACAATAGTGACTCTGTCTTTGACAGCACCCACTACACAATTGATTCTTCTTTTAACAATAACAGCAACAC
AACTAGCGCCACTCATAAGGAACCCACCTGGGATGAGAGATACAGAGAGAGAGTTGATAAATTAGTTTTTAAAAAAGAAACCCAAAAAGGGAAACTGCAA
ATTTTGGAGGAACAAGAAGAGCAAGTGGAGGAGCAAAGGAGGAGACTTTTGGCTAAAGCTTTGCTGGAGGCAGCATTAGAGAGGCCTGATGAGGAGGAGG
GTGAGGAGGTCAGAGAGGAAGATCAGAAGTCGCTTTCGGTCGGGATTATTGGTGCTCCAAATGCTGGGAAGTCTGCCTTGACTAATTTCATGGTTGGGAC
AAAGGTTGCTGCTGTGTCACGGAAGACAAATACCACAACTCATGAAGTGTTGGGAGTGATGACAGATGGAGACACTCAAATATGTTTCTTTGACACCCCT
GGACTCATGGTAAATAACCGTGGTTATCCTTACAAAGACATGAAGACACGTGTCGAAAGTGCCTGGAGTTCAGTTGATTTATATGATGTGCTTATGGTTA
TTTTTGATGTCCATAGGCATCTTACCAGACCTGATTCAAGAGTGGTTGGATTGATAAAATGCATGGGAGCACAAGCAAACCCAAAACAAAAGCGGGTGTT
GTGTATGAATAAGATTGACCTTGTTGAGAAAAAGAAAGACTTATTGAAGGTTGTTGAGGAATTCAAAGATCTTCCTGGATATGATAGGCACTTCATGATC
TCAGGACTGAAGGGCTCTGGAGTAAAACATCTTAATCAATATTTGATGGAGCAGGCAGTCAAAAGACCATGGGATGAAGATCCACTATCTATGAGTGAAG
AAGTCATGAAGAATATTTCATTAGAAGTTGTTCGGGAAAGGTTATTAGACCATGTTCATCAGGAAATCCCTTATGGCATTGACCATCGGTTGATGGATTG
GAAAGAATTAAGAGATGGTTCTCTGAGGATTGAACAGCACTTCATCACTCCTAAACTAAGCCAGCGAAAGATTCTTGTGGGGAAGAAGGGATCAAAAATT
GGGAGGATCGGTGTTGAAGCTAATGAAGAGCTGAGGTCCATATTCAAGAGGGAAGTGCACCTCATCCTCCAGGTTCGAATTAAATGA
AA sequence
>Potri.001G160800.1 pacid=42788063 polypeptide=Potri.001G160800.1.p locus=Potri.001G160800 ID=Potri.001G160800.1.v4.1 annot-version=v4.1
MKSLRALRIASTLASKPPPFVYTNQNLLSHFFSAQPDQNESENDNSDSVFDSTHYTIDSSFNNNSNTTSATHKEPTWDERYRERVDKLVFKKETQKGKLQ
ILEEQEEQVEEQRRRLLAKALLEAALERPDEEEGEEVREEDQKSLSVGIIGAPNAGKSALTNFMVGTKVAAVSRKTNTTTHEVLGVMTDGDTQICFFDTP
GLMVNNRGYPYKDMKTRVESAWSSVDLYDVLMVIFDVHRHLTRPDSRVVGLIKCMGAQANPKQKRVLCMNKIDLVEKKKDLLKVVEEFKDLPGYDRHFMI
SGLKGSGVKHLNQYLMEQAVKRPWDEDPLSMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLMDWKELRDGSLRIEQHFITPKLSQRKILVGKKGSKI
GRIGVEANEELRSIFKREVHLILQVRIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30960 GTP-binding family protein (.1... Potri.001G160800
[exp]
0 1 Pt-ERG.1
AT3G27550 RNA-binding CRS1 / YhbY (CRM) ... Potri.001G343700
[exp]
2.00 0.8973
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.011G032400
[exp]
2.44 0.8709
AT3G49080 Ribosomal protein S5 domain 2-... Potri.012G144700
[exp]
2.82 0.8613
AT1G60640 unknown protein Potri.017G121000
[exp]
4.00 0.7895
AT2G23470 RUS4 ROOT UV-B SENSITIVE 4, Protein... Potri.007G035300
[exp]
4.24 0.7810
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Potri.002G220300
[exp]
4.24 0.8665
Potri.006G257700
[exp]
9.59 0.7735
AT1G15420 unknown protein Potri.001G173300
[exp]
13.85 0.8058
AT1G02370 Tetratricopeptide repeat (TPR)... Potri.002G194400
[exp]
14.96 0.8299
AT5G11760 unknown protein Potri.018G056000
[exp]
17.49 0.7315

Potri.001G160800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.