Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UFO.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30950 554 / 0 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT5G15710 127 / 5e-32 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 111 / 1e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 96 / 1e-21 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G33160 66 / 2e-11 F-box family protein (.1) AT5G43190 62 / 3e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G17560 42 / 0.0008 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074100 [exp] 752 / 0 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.017G102300 [exp] 126 / 5e-32 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 125 / 9e-32 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 117 / 2e-28 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 112 / 7e-27 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 103 / 7e-24 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G166500 [exp] 102 / 2e-23 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G118700 [exp] 79 / 5e-16 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 78 / 2e-15 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007755 [exp] 574 / 0 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10018690 [exp] 560 / 0 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10037030 [exp] 122 / 2e-30 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 122 / 3e-30 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 123 / 4e-30 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 120 / 1e-29 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007855 [exp] 99 / 2e-22 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10003029 [exp] 97 / 1e-21 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10010610 [exp] 84 / 2e-17 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007740 [exp] 66 / 2e-11 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G160900.1 pacid=42789822 polypeptide=Potri.001G160900.1.p locus=Potri.001G160900 ID=Potri.001G160900.1.v4.1 annot-version=v4.1 ATGGAAGGTGCTTTCAGCAATTCCATGCCCTCACACTTCTCCTACACTTTCACCCCTGGGACTAGTAGTGCTTATGTTACAGATACTGTCACCAATACTT GGATGGACACCAGGATATGGAGTAAGCTCCCGCAATCGCTGATTGATCGTGTAATCGCCTTTCTTCCACCTCCAGCCTTTTTTAGAGCTCGTTGTGTCTG CAAGAGATGGTATAGTCTCTTGTTCTCCAACAATTTTCTTGAACTCTATATCCAAATATCCCCACGCCGCCATTGGTTCTTATTCTTCAAGCACAAAAGC TTAAAAAGCTACATCTGTGGAAACAACAGTAACACCACTCGTGGCAGTGGCGGCCAAACTAGTACAACCAATATATTTGAAGGGTACCTCTTTGATCCTT ACGATATTGCATGGTATAGAATTTCTTTTCCCTTGGTTCCATCTGGGTTCTCGCCTGCTGCTGCTTCTGGTGGCTTAATATGTTGGGTCTCAGATGAGGC TGGTGCAAAGAGTATCATTTTATGCAACCCACTTATTGGCTCTCTATCTCAGTTGCCGCCAACGTTAAGACCACGTCTCTTTCCTTCAACTGGCTTAAAA GTTGGGCCATCCTCAATTGATGTGGCTGTTGCAGGTGATGACTTGATTTCTCCATATGCAGTCAAGAATTTATCCACTGAAAGTTTTCATATTGATGCTG GTGGGTTTTACTCTCTATGGGGTACTACTTCTTCTCTTCCAAGGCTTTGTAGCCTTGAATCAGGTCAAATGGTTTGTGTTGATGACAGATTTTACTGCAT GAATTACAACCCATTTAGCGTTTTGGCTTATGAAATAGCAGCAAACAGCTGGTGCAAGATTCAAGCTCCAATGAGGAGATTTCTGCGCTCGCCAAGCTTG GTTGAGAGCATGGAAAAACTCATTCTTGTTGCAGCAGTGGAGAAGAGCAAGCTCAACGTGCCAAAGAGCTTGAGACTTTGGAGTTTGCAAGCTTGTGGAA CAACATGGGTAGAGATTGAAAGGATGCCCCAGCAACTTTACCAACAATTTGAGGAGATGGAAGCTGGTCACGGGTTTGATTGTGTTGGACATGGTGAGTT TATTGCTATCATTATCAGAGGATCGGACAAGGCTTTGCTGTTTGATATCTTAAGGAAGGCGTGGCAGTGGATTCCTCCATGTCCTTACATGAATCACGGA GGTGGAGGTGATGATGAATTGCATGGTTTTGCTTATGAGCCTACAGTCACTACTCCAGTTACAGGCCTCCTTGATCAGCTCACAATCCCATTTCAGTCAT TCAGTGGGTTAATTGGCTAG
AA sequence Show only first row Show all	>Potri.001G160900.1 pacid=42789822 polypeptide=Potri.001G160900.1.p locus=Potri.001G160900 ID=Potri.001G160900.1.v4.1 annot-version=v4.1 MEGAFSNSMPSHFSYTFTPGTSSAYVTDTVTNTWMDTRIWSKLPQSLIDRVIAFLPPPAFFRARCVCKRWYSLLFSNNFLELYIQISPRRHWFLFFKHKS LKSYICGNNSNTTRGSGGQTSTTNIFEGYLFDPYDIAWYRISFPLVPSGFSPAAASGGLICWVSDEAGAKSIILCNPLIGSLSQLPPTLRPRLFPSTGLK VGPSSIDVAVAGDDLISPYAVKNLSTESFHIDAGGFYSLWGTTSSLPRLCSLESGQMVCVDDRFYCMNYNPFSVLAYEIAANSWCKIQAPMRRFLRSPSL VESMEKLILVAAVEKSKLNVPKSLRLWSLQACGTTWVEIERMPQQLYQQFEEMEAGHGFDCVGHGEFIAIIIRGSDKALLFDILRKAWQWIPPCPYMNHG GGGDDELHGFAYEPTVTTPVTGLLDQLTIPFQSFSGLIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Potri.001G160900 [exp]	0	1	UFO.2
AT5G26940		DPD1	defective in pollen organelle ...		Potri.005G020600 [exp]	38.27	0.8084
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.001G349400 [exp]	40.24	0.7735
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G025100 [exp]	112.36	0.7406
AT3G02750			Protein phosphatase 2C family ...		Potri.013G085500 [exp]	144.39	0.7083
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Potri.001G303700 [exp]	211.83	0.7306

Compare expression of checked genes

Potri.001G160900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.