Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72300 1199 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G53890 819 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 812 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G17250 658 / 0 AtRLP3 receptor like protein 3 (.1) AT1G17240 635 / 0 AtRLP2 receptor like protein 2 (.1) AT5G07280 506 / 3e-160 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 503 / 2e-159 BRL1 BRI1 like (.1.2) AT3G13380 501 / 1e-158 BRL3 BRI1-like 3 (.1) AT1G17230 467 / 3e-146 Leucine-rich receptor-like protein kinase family protein (.1) AT4G39400 468 / 6e-146 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074000 [exp] 1899 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G398500 [exp] 875 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.011G116900 [exp] 859 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.008G144700 [exp] 818 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 813 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.012G139000 [exp] 530 / 3e-168 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 524 / 5e-166 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G169600 [exp] 498 / 9e-157 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 492 / 1e-154 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016395 [exp] 1354 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 1350 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009213 [exp] 816 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 804 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10033533 [exp] 492 / 7e-155 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10014996 [exp] 491 / 7e-154 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10020835 [exp] 484 / 9e-152 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 484 / 4e-151 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038726 [exp] 464 / 7e-145 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 460 / 5e-143 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G161000.1 pacid=42792244 polypeptide=Potri.001G161000.1.p locus=Potri.001G161000 ID=Potri.001G161000.1.v4.1 annot-version=v4.1 ATGATGGTGATAATAATGGTCAGGAAAGACAGCTTTACTTCCCTGTCTGGTTTGACATATCCGCTCATCATAATTCAAAGACCTAGAACCCCTTCCTCCT CCTCCTCGGTCATGTTCTTATCTCTTCTTCTAATTTTAATACTATTGCTACTGCCCCCTTGCCATGCCACAACTGTCTGCAATCAAGATGATCATGACTC TCTCTTGTTGTTCTTCTCCTGTTTATCATCTTCTTCTCCTTTGAATTGGGGTCATTCCACTGATTGCTGCCTCTGGGAAGGAGTTGATTGTGGTGGAACT GCAGATGGTCGAGTAACCAGTCTTTATCTACCTTTCAGAGACCTTAATGGCACCCTCGCTCCATCTCTTGCCAATCTCACGAGTCTTACTCACCTCAATC TTTCACATAATCGCCTGTATGGTTCTCTACCAGTTAGATTCTTTTCCTCGCTCAGAAGCCTCCAGGTTCTTGATCTCAGCTACAACCGTCTCGATGGTGA AATACCATCCCTTGATACTAATAACCTTATCCCTATCAAGATAGTGGACTTGTCTAGCAACCACTTCTATGGGGAATTAAGTCAATCCAACTCATTCCTC CAGACAGCTTGTAATTTGACTAGACTCAATGTTAGCAACAACAGCTTCGCAGGCCAAATTCCTTCCAACATCTGCAACATTTCTTCTGGTTCCACGACCC TCCTTGACTTCTCCAACAACGATTTCAGCGGGAACCTCACTCCTGGATTTGGGGAATGTTCCAAACTTGAGATATTCCGTGCTGGTTTCAATAATCTCTC GGGGATGATTCCTGATGATCTTTACAAAGCAACCTCACTTGTACATTTCTCATTACCTGTCAACCAGCTCTCTGGTCAAATCAGTGATGCTGTGGTCAAT CTCACTAGTCTCAGGGTTCTTGAGCTGTACTCCAATCAGTTGGGTGGCAGGATACCCCGGGATATAGGCAAGCTCTCCAAGTTGGAACAGTTGCTGCTTC ACATTAACTCGCTCACAGGTCCTCTGCCTCCATCTCTGATGAACTGTACTAATCTAGTAAAATTGAATCTGCGGGTCAATTTCTTGGCAGGAAATCTCTC TGACTCCGATTTCTCCACACTCCGCAATCTTAGCACCCTCGATCTTGGTAACAACAAGTTTACAGGTACCTTTCCCACTAGCCTCTACTCATGCACATCA CTAGTTGCAGTTAGACTTGCCAGTAATCAGATAGAGGGACAGATCTTACCTGACATACTAGCGCTACGATCTCTATCTTTTCTCTCAATTTCCGCCAACA ACTTAACTAACATTACTGGGGCTATCCGAATTCTGATGGGTTGCAAGAGCCTCAGTACTCTCATCCTCTCCAATAATACTATGAGTGAAGGTATACTAGA CGATGGAAATACATTAGACTCTACTGGATTCCAAAATCTCCAGGTTTTGGCCCTAGGTCGTTGCAAACTCTCCGGTCAAGTGCCATCCTGGCTAGCCAAC ATCAGTAGCCTACAGGTCATAGACCTGTCTTACAATCAAATCAGAGGTTCAATTCCTGGTTGGCTGGATAATCTTTCAAGCCTTTTCTACTTAGACTTGT CTAATAACCTTCTTTCAGGAGAATTTCCTTTGAAACTCACGGGATTGCGAACACTAACATCGCAAGAAGTTATTAAACAACTGGACAGAAGTTATCTAGA GTTGCCCGTGTTTGTCATGCCCACAAATGCTACCAATTTGCAGTACAATCAGCTCTCTAACCTGCCACCGGCTATATACCTTGGAAACAACAACCTCAGT GGCAATATCCCTGTACAGATTGGCCAACTGAATTTCCTTCATGTGTTGGATCTCAGTGATAACAGATTCTCTGGAAACATTCCAGATGAATTATCAAACC TCGCTAACTTGGAGAAATTGGATCTCTCAGGAAACCTTTTGTCCGGAGAAATTCCTACTTCACTCAAAGGTCTCCATTTCTTGTCTTCGTTCAGTGTTGC CAATAATGATCTTCAAGGACCTATACCATCTGGAGGTCAGTTTGATACTTTCCCTAGTTCCAGCTTTACAGGGAATCAATGGTTATGTGGTCAGGTTTTG CAGCGATCTTGTTCCAGTTCACCAGGAACCAACCATACTTCAGCTCCTCATAAAAGCACAAACATAAAACTTGTCATCGGACTTGTCATTGGTATCTGTT TCGGCACTGGTTTATTTATTGCTGTGTTAGCGCTGTGGATATTGTCCAAGAGAAGGATCATTCCTGGAGGGGACACTGACAACACTGAGTTGGATACAAT TTCCATCAACTCTGGATTTCCTCCAGAGGGTGACAAGGATGCCAGCTTAGTTGTTTTGTTCCCAAGTAATACTAATGAGATCAAGGATCTAACCATTTCT GAACTCTTGAAAGCCACTGACAATTTTAATCAGGCAAACATTGTTGGTTGTGGGGGTTTTGGTTTGGTGTATAAGGCAACATTAGGAGATGGGAGCAAGC TGGCTGTCAAGAAACTCTCGGGAGACTTGGGTCTGATGGAAAGAGAATTCAGAGCAGAGGTAGAGGCACTTTCCACAGCCCAACATGAAAACCTGGTTTC CCTGCAAGGCTATTGTGTGCATGAGGGATGTCGCTTGCTTATATATTCGTTCATGGACAATGGGAGTTTGGATTACTGGTTGCATGAGAAGACCGATGGT GCATCCCAACTAGATTGGCCCACTAGACTTAAGATTGCAAGGGGAGTAGGTTGTGGTCTGGCTTACATGCACCAGATATGTGAGCCTCATATTGTGCATC GTGACATCAAATCCAGCAACATCCTCCTTGACGAGAAGTTCGAAGCACACGTAGCAGATTTTGGATTGTCCCGGTTGATTCTGCCTTACCAAACTCATGT TACAACCGAGCTTGTTGGAACTCTGGGTTATATTCCTCCTGAGTATGGGCAAGCATGGGTAGCCACTTTGAGGGGAGATATATACAGTTTTGGAGTTGTT ATGCTTGAACTGCTGACTGGAAAGAGACCTATGGAGGTATTCAAGCCAAAGATGTCAAGAGAACTGGTTGGCTGGGTGCAGCAAATGAGAAATGAGGGTA AACAAGAAGAGATCTTTGATCCTCTCCTGAGAGGAAAGGGTTTTGATGACGAGATGCTGCAAATACTAGATGTGGCCTGCATGTGCGTTAGCCAGAATCC TTTCAAGAGACCAACCATCAAGGAAGTTGTTGATTGGCTCAAGAATGTTGGCTCACACAGAAATGAAAATAAGGTACAACAGATATATTAA
AA sequence Show only first row Show all	>Potri.001G161000.1 pacid=42792244 polypeptide=Potri.001G161000.1.p locus=Potri.001G161000 ID=Potri.001G161000.1.v4.1 annot-version=v4.1 MMVIIMVRKDSFTSLSGLTYPLIIIQRPRTPSSSSSVMFLSLLLILILLLLPPCHATTVCNQDDHDSLLLFFSCLSSSSPLNWGHSTDCCLWEGVDCGGT ADGRVTSLYLPFRDLNGTLAPSLANLTSLTHLNLSHNRLYGSLPVRFFSSLRSLQVLDLSYNRLDGEIPSLDTNNLIPIKIVDLSSNHFYGELSQSNSFL QTACNLTRLNVSNNSFAGQIPSNICNISSGSTTLLDFSNNDFSGNLTPGFGECSKLEIFRAGFNNLSGMIPDDLYKATSLVHFSLPVNQLSGQISDAVVN LTSLRVLELYSNQLGGRIPRDIGKLSKLEQLLLHINSLTGPLPPSLMNCTNLVKLNLRVNFLAGNLSDSDFSTLRNLSTLDLGNNKFTGTFPTSLYSCTS LVAVRLASNQIEGQILPDILALRSLSFLSISANNLTNITGAIRILMGCKSLSTLILSNNTMSEGILDDGNTLDSTGFQNLQVLALGRCKLSGQVPSWLAN ISSLQVIDLSYNQIRGSIPGWLDNLSSLFYLDLSNNLLSGEFPLKLTGLRTLTSQEVIKQLDRSYLELPVFVMPTNATNLQYNQLSNLPPAIYLGNNNLS GNIPVQIGQLNFLHVLDLSDNRFSGNIPDELSNLANLEKLDLSGNLLSGEIPTSLKGLHFLSSFSVANNDLQGPIPSGGQFDTFPSSSFTGNQWLCGQVL QRSCSSSPGTNHTSAPHKSTNIKLVIGLVIGICFGTGLFIAVLALWILSKRRIIPGGDTDNTELDTISINSGFPPEGDKDASLVVLFPSNTNEIKDLTIS ELLKATDNFNQANIVGCGGFGLVYKATLGDGSKLAVKKLSGDLGLMEREFRAEVEALSTAQHENLVSLQGYCVHEGCRLLIYSFMDNGSLDYWLHEKTDG ASQLDWPTRLKIARGVGCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDIYSFGVV MLELLTGKRPMEVFKPKMSRELVGWVQQMRNEGKQEEIFDPLLRGKGFDDEMLQILDVACMCVSQNPFKRPTIKEVVDWLKNVGSHRNENKVQQIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72300			Leucine-rich receptor-like pro...		Potri.001G161000 [exp]	0	1
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	2.00	0.8699
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	2.64	0.8789
AT5G11700			unknown protein		Potri.006G234500 [exp]	3.46	0.8622
AT3G14750			unknown protein		Potri.009G076700 [exp]	6.92	0.8230
					Potri.017G152701 [exp]	8.48	0.8459
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	8.94	0.8345
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	11.83	0.8154
					Potri.003G014056 [exp]	13.78	0.8326
					Potri.006G242350 [exp]	18.33	0.7970
AT5G44180	HD		Homeodomain-like transcription...		Potri.017G016200 [exp]	20.56	0.7771

Compare expression of checked genes

Potri.001G161000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.