Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53710 637 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093800 [exp] 57 / 1e-08 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036645 [exp] 582 / 0 AT1G53710 589 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Lus10042935 [exp] 538 / 0 AT1G53710 556 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Lus10042936 [exp] 208 / 1e-63 AT1G53710 206 / 1e-63 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.001G161100.1 pacid=42788465 polypeptide=Potri.001G161100.1.p locus=Potri.001G161100 ID=Potri.001G161100.1.v4.1 annot-version=v4.1 ATGAAGCAGCATCACAAATTGACGCTGGTACTGTGCGGGATATGGGTTTTCACTCTGCTCTACGGCGAGATGTTTGCCTTCTGGCTTCCATTTCAATCCT CTTGTTCCTGGCCTCATCTTTCCTCTCCTCCTACTTCTACCATAAATGGGGTTCAATCTCCCTCGGATTATGTTAAGGTTGCTGTCGTAACAGACCAACA GCTAATGGACAAAACCTCCATTGGTCTACCTCCAAAATCATTTCTTTTGGAGACTGTGAAGTTCTATGCTGATTTATACATGCGCCGCGCATTCTTTGCA TCTATCCTCCCTTTCAAACCCAATGTCGTCTTGTTTCTCGGCGATTCCTTTGATGGGGGGCCTTTTTTATCAGATGAAGAATGGCAGGAATCTTTACATC GATTTAAACACATTTTTGGGCTGAATGACGATGGAATACTTAGAAACATCAAGGTTTACTTCATTCCTGGAAACCATGATATCGGCTATGCAAGTATCAG CTCTCATAACCCAAAGGTGGTTGAGCGCTATGAGGGAGAATTTGGGATCAGAAACCACCGGTTTACAATTGGAAAAGTGGAGTTTGTTGCGGTTGATTCC CAAACTCTAGATGGGCAGCCGCAAGGGAATCTGGCATCAATGTCTTGGGAGTTCATAAAAAATGCCTCCATCGATGTTCAATTACTTCCAAGGGTATTGT TGAGCCATATTCCCCTGTATCGGCGGGATTATACTTATTGTGGTCCTCATCGTAGTTCCCCGATCATCAATCAGCGGATCTCACATTCTGCTCACAATCA TGAAATTGTGTATCAGAATTATCTTACCGAGGAATCTTCAAACCAATTGCTGGAAATGATCAAACCTGCACTCGTTTTATCTGGCCATGATCATGACCAG TGCTCAGTGACCCATGAGTCAAAATTTGGGCCAGTAAAGGAGCACACTGTAGGGACATTAAGTTGGCAGATGGGAAATTTGTATCCCTCTTTCATGCTGT TATCTGCTACTAACTCTGCAAGTTCCAATATATCCGCCCCAGAAGCAGCAGTGATGACTCAGCTGTGCTTTCTTCCAATGCAAACACACATCTACATATG GTATCTTTCCCTCTTTGCTCTGACCCTTCTTACTCTCCTCTTGTGGCCAACAAGTGGCGTGGATTTTGGGCATCACTTAAGTGATTTAATGGCATCTATC AGACTATATAGCAGCATGTTCAAAGGGACCAAAGAGAAAACTGAAGATGAGGATTGTGAATATGAGATGATGTGGGATGCAGAAGGATCGATGCACCTTG TAAAGAAAGCACGCGACACCCCTCTTCTACATCCAAGCGATAAAGCTTCAGTGGAAAGGGGTAATGCTGTGATGCGCCCAACTGCAAGAAAAAATGCTCC TCGGAACATGGAAGTTTCTATGAACATAGACATAAATGCAGATACTGGATTTGATAAACTATCACATAGAACCAGCAAATCAAAGACAAAAATCATTATC CACAGACTAGTGAGGACATTCCAAATGGTCACAGTCATTGCTACTGTAAATGTACCTCTCTACATGATGTTACTCTTCAAGGATTGGATCGACAAGTGA
AA sequence Show only first row Show all	>Potri.001G161100.1 pacid=42788465 polypeptide=Potri.001G161100.1.p locus=Potri.001G161100 ID=Potri.001G161100.1.v4.1 annot-version=v4.1 MKQHHKLTLVLCGIWVFTLLYGEMFAFWLPFQSSCSWPHLSSPPTSTINGVQSPSDYVKVAVVTDQQLMDKTSIGLPPKSFLLETVKFYADLYMRRAFFA SILPFKPNVVLFLGDSFDGGPFLSDEEWQESLHRFKHIFGLNDDGILRNIKVYFIPGNHDIGYASISSHNPKVVERYEGEFGIRNHRFTIGKVEFVAVDS QTLDGQPQGNLASMSWEFIKNASIDVQLLPRVLLSHIPLYRRDYTYCGPHRSSPIINQRISHSAHNHEIVYQNYLTEESSNQLLEMIKPALVLSGHDHDQ CSVTHESKFGPVKEHTVGTLSWQMGNLYPSFMLLSATNSASSNISAPEAAVMTQLCFLPMQTHIYIWYLSLFALTLLTLLLWPTSGVDFGHHLSDLMASI RLYSSMFKGTKEKTEDEDCEYEMMWDAEGSMHLVKKARDTPLLHPSDKASVERGNAVMRPTARKNAPRNMEVSMNIDINADTGFDKLSHRTSKSKTKIII HRLVRTFQMVTVIATVNVPLYMMLLFKDWIDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53710			Calcineurin-like metallo-phosp...		Potri.001G161100 [exp]	0	1
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	2.23	0.8512
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	5.91	0.8225
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.008G168100 [exp]	9.16	0.8109	CKI1.3
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	11.48	0.8239
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	12.64	0.7905
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	12.96	0.8392
AT3G02970		EXL6	EXORDIUM like 6 (.1)		Potri.013G080100 [exp]	13.67	0.7689
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	17.83	0.8328
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	20.49	0.7264
AT4G38120			ARM repeat superfamily protein...		Potri.001G454200 [exp]	24.71	0.7747

Compare expression of checked genes

Potri.001G161100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.