Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AHA10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17260 1442 / 0 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT5G62670 1378 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G42640 1378 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT3G47950 1377 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT2G07560 1376 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT4G30190 1371 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1362 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT1G80660 1358 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT5G57350 1342 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G24520 1330 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090300 [exp] 1409 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 1406 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G005900 [exp] 1392 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 1386 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.015G066000 [exp] 1373 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.018G112400 [exp] 1373 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G188600 [exp] 1369 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.012G071600 [exp] 1367 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.018G006000 [exp] 1361 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037466 [exp] 1419 / 0 AT1G17260 1387 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Lus10001631 [exp] 1397 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1382 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10024105 [exp] 1363 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10003259 [exp] 1352 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1352 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10040166 [exp] 1283 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1282 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10019593 [exp] 1256 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10026224 [exp] 1254 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G161400.1 pacid=42792453 polypeptide=Potri.001G161400.1.p locus=Potri.001G161400 ID=Potri.001G161400.1.v4.1 annot-version=v4.1 ATGGCTGAGGATCTGGAGAAACCACTGTTGAATCCCGAGAGCTTCAACCGAGAGGGGATTGACTTGGAGCGTTTGCCACTAGAGGAGGTCTTTGAGCAAC TGAGAACATCACACAGAGGACTCTCGTCTGAAGATGCTGAAGCCAGATTGATGATTTTTGGTCCAAACAAACTTGAAGAGAAGCCAGAAAATAAGTTTTT GAAATTCCTTGGTTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCGGCAGCAATAATGGCAATTGCCCTTGCTAATGGTGGAGGGCAAGGTCCTGAC TGGCAGGATTTTGTAGGGATTATTTGCCTGTTGATAATCAATTCAACAATTAGTTTTATAGAGGAGAACAATGCTGGGAATGCTGCATCCGCTCTTATGG CTCGTTTAGCTCCCAAAACGAAGGTCCTGAGAGATGGGCAGTGGAAAGAGCAAGATGCTGCTATTTTGGTGCCAGGAGATATAGTTAGCATTAAGCTTGG GGATATCATCCCTGCGGATTCTAGATTACTCGAAGGAGATTCATTAAAAATTGACCAGTCAGCTCTTACTGGAGAATCTCTTCCTGTTACCAAGAGAACA GGCGATGAAGTTTATTCTGGCTCAACATGTAAGCAAGGTGAAATTGAAGCTGTGGTTATTGCGACAGGAGTAAACAGTTTCTTTGGAAAAGCAGCACATC TAGTTGACTCCACTGAAGTCGTTGGACATTTCCAGAAGGTCCTTACCGCCATTGGGAACTTCTGCATTTGCTCTATAGCTGTTGGAATGATTCTTGAAAT CATTATCATGTTCCCAGTACAGCACCGTTCATACAGGGATGGAATCAACAACCTTCTGGTTCTCTTAATCGGAGGAATACCAATAGCTATGCCAACAGTC TTGTCTGTCACACTAGCAATTGGTTCTCATCGGCTATCTCAACAGGGTGCCATTACAAAGAGGATGACAGCGATAGAAGAAATGGCAGGAATGGATGTCC TCTGCAGTGACAAAACTGGAACTCTTACCCTCAATCGCCTGACAGTTGATCGAAACCTTATCGAGGTTTTCAACAAAGATATGGACAAAGATATGATTGT CTTGCTTGCAGCCAGAGCATCCAGATTGGAGAATCAGGATGCTATTGATGCAGCCATAGTTAACATGCTTGCTGATCCAAAGGAGGCACGTGAAAACATC AGAGAAGTGCATTTTTTACCCTTCAATCCGGTGGACAAACGTACTGCAATTACATACATTGATTCTGATGGTAATTGGTATCGAGCTAGCAAAGGAGCTC CTGAGCAGATTCTAAATATGAGCAAAGAGAAGGACGAGATCTCTGGAAAAGTGCATGCCATCATTGAAAAATTTGCCGAAAGAGGCTTGCGATCACTTGG AGTTGCATTTCAGGAAGTTCCTGAAAAAACTAGGGAAAGTCCTGGAGGTCCTTGGACGTTTTGTGGGTTGTTGCCCTTGTTTGATCCTCCTAGGCATGAT AGTGCTGAGACCATCCGCAGAGCACTAAACCTTGGAGTTAATGTCAAGATGATTACAGGTGATCAACTGGCAATTGCAAAGGAGACAGGAAGACGACTTG GCATGGGAACGAACATGTACCCCTCTTCAACACTGTTAGGACGGGACAGGGATGAAAATGAAGCTCTTCCTGTCGACGAGCTCATTGAAAAGGCAGATGG CTTTGCTGGTGTATTTCCAGAGCACAAATACGAAATTGTTAAAATTTTACAAGAAAAGAAGCATGTGGTTGGAATGACTGGAGATGGTGTGAATGATGCA CCTGCTTTGAAGAAAGCAGATATTGGAATAGCAGTGGCAGATTCTACAGATGCTGCGAGAAGTGCTTCTGATATTGTCTTGACCGAGCCTGGTCTAAGTG TGATTATCAGTGCTGTCTTAACTAGCAGAGCTATATTCCAAAGAATGAAGAACTATACAATATATGCCGTCTCCATAACCATTAGGATTGTGCTTGGTTT TGCGCTTCTAGCTTTGATATGGGAATATGACTTCCCACCTTTCATGGTTCTGATAATAGCAATACTCAATGATGGGACCATAATGACTATCTCGCAAGAT CGAGTTAAGCCATCTCCAAGGCCTGACAGTTGGAAGCTTGAAGAGATATTTGCGACAGGCATTGTCATCGGCACATATCTTGCTTTGGTCACTGTCCTGT TTTACTGGATTGTGATCGATACAAATTTCTTCGAGACACACTTCCATGTGAGGTCTATCTCCAGCAACACTGAGGAAGTCTCTTCGGCCGTGTATCTACA AGTCAGCATCATCAGCCAGGCTTTAATATTTGTTACGCGTAGTCAAAGTTGGTCGTTCCTTGAGAGGCCTGGAATTCTCTTGATGTGTGCATTTGTGGTG GCTCAACTGGTGGCCACTATAATTGCTGTCTATGCACATATTAGCTTTGCTTATATTAGAGGCATTGGATGGGGATGGGCTGGTGTCATATGGTTGTATA GTTTGGTCTTCTACGTACCACTGGATATTATCAAGTTCACAATTCGTTATGCCTTGAGTGGAGAAGCATGGAATCTCTTATTTGATAGAAAGACTGCTTT TTCTACAAAGAAAGATTATGGAAAGGAAGATAGGGAAGCTAAGTGGATACTTTCCCAGAGGAGTCTACAAGGGTTGATGGCAACAGACCAAGATTTCAAT GGCAGGAGATCAACTTTGATTGCCGAACAGGCCAGACGGCGTGCAGAAATAGCTAGACTGGGGGAGATCCACACCTTGAGAGGACATGTAGAATCGGTAG TCAGGCTCAAAAATCTGGACTTAAATTTAATTCAAACAGCTCATACGGTTTGA
AA sequence Show only first row Show all	>Potri.001G161400.1 pacid=42792453 polypeptide=Potri.001G161400.1.p locus=Potri.001G161400 ID=Potri.001G161400.1.v4.1 annot-version=v4.1 MAEDLEKPLLNPESFNREGIDLERLPLEEVFEQLRTSHRGLSSEDAEARLMIFGPNKLEEKPENKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGQGPD WQDFVGIICLLIINSTISFIEENNAGNAASALMARLAPKTKVLRDGQWKEQDAAILVPGDIVSIKLGDIIPADSRLLEGDSLKIDQSALTGESLPVTKRT GDEVYSGSTCKQGEIEAVVIATGVNSFFGKAAHLVDSTEVVGHFQKVLTAIGNFCICSIAVGMILEIIIMFPVQHRSYRDGINNLLVLLIGGIPIAMPTV LSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNKDMDKDMIVLLAARASRLENQDAIDAAIVNMLADPKEARENI REVHFLPFNPVDKRTAITYIDSDGNWYRASKGAPEQILNMSKEKDEISGKVHAIIEKFAERGLRSLGVAFQEVPEKTRESPGGPWTFCGLLPLFDPPRHD SAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSTLLGRDRDENEALPVDELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDA PALKKADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFALLALIWEYDFPPFMVLIIAILNDGTIMTISQD RVKPSPRPDSWKLEEIFATGIVIGTYLALVTVLFYWIVIDTNFFETHFHVRSISSNTEEVSSAVYLQVSIISQALIFVTRSQSWSFLERPGILLMCAFVV AQLVATIIAVYAHISFAYIRGIGWGWAGVIWLYSLVFYVPLDIIKFTIRYALSGEAWNLLFDRKTAFSTKKDYGKEDREAKWILSQRSLQGLMATDQDFN GRRSTLIAEQARRRAEIARLGEIHTLRGHVESVVRLKNLDLNLIQTAHTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	0	1	AHA10.1
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	1.41	0.9149
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.008G085500 [exp]	1.73	0.8941
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	2.44	0.9138
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	2.64	0.8723	Pt-TAN1.2
AT1G65060		4CL3	4-coumarate:CoA ligase 3 (.1.2...		Potri.019G049500 [exp]	4.00	0.8937	Ptr4CL4,4CL3.1
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	6.00	0.8790
AT4G38640			Plasma-membrane choline transp...		Potri.009G132900 [exp]	7.34	0.8305
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.010G060700 [exp]	8.24	0.8310
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	8.94	0.8804
AT2G47115			unknown protein		Potri.014G115200 [exp]	8.94	0.8661

Compare expression of checked genes

Potri.001G161400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.