Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14360 634 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G42930 397 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 377 / 3e-125 alpha/beta-Hydrolases superfamily protein (.1) AT5G67050 370 / 7e-123 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 332 / 6e-108 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT5G18640 62 / 4e-10 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 58 / 9e-09 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G31100 52 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 51 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G52430 47 / 4e-05 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073800 [exp] 1007 / 0 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G044500 [exp] 405 / 1e-136 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 395 / 2e-132 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 389 / 2e-130 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 365 / 4e-121 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 229 / 1e-68 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 56 / 4e-08 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 51 / 2e-06 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 50 / 3e-06 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037465 [exp] 619 / 0 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 609 / 0 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10005092 [exp] 360 / 4e-119 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 358 / 8e-118 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 348 / 5e-114 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 345 / 6e-113 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 55 / 7e-08 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 49 / 7e-06 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 49 / 8e-06 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 49 / 9e-06 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.001G161500.1 pacid=42789514 polypeptide=Potri.001G161500.1.p locus=Potri.001G161500 ID=Potri.001G161500.1.v4.1 annot-version=v4.1 ATGTCCACCAAAAAGATAGGAGGGACTGTATTCATGGCGGCTGCGACTAGTACTGCTACAAAATTTGAAAACAACACCGATGATCAAGAGAAGAGTGAAG AAAGCATTACCAACTATCTGATAGTGAGGCCAGAAAAGGGAGGAATGTTGGACTTGTTGAGGTACTTGGCATGGGCCGACATAGGAAGTGGTGTGAGATT CTTAGAGAGCTCAGAAGAGGGAATTATGGGTGAGGAGGCAGCTGATCATAGGTGGATTATATTGGTGTCTATTATTGCTCGGAAGATCATCTCCTTATTT GGCAAGCCCTTGGAGTACACTGGTTTTGTGGTTGATTTCTTTCTCAATCTCTTGTTTCAGAATGGTGGCATCATGGGCTTATTTCTCAACTTTCTCCAAG GAAAGGTGGTGACACCGCAGAGAGACACCGAGACTTTTATAAGTAGCATCGGGCATTTGGATGGGCGAATAGACCTATACAGAGCTGAAAACTTGCTGGA ACAAATAGATCATTCGGTTTCCGCAGAGAAAACAATCACAGAAGAAATAGGGAACCGCGCTCATATGGACCTCTGTATCATGGCATCCAAATTAGCTTAT GAGAACGCTAAAGTTGTTCGAAGTATTGTTGTTCATCACTGGAAGATGCATTTTGTGGACTTCTACAACTGCTGGAATGATTTTCAAAAGGAATTTTCCA CTCAAGTGTTCATTCTTTGTGACAAGCCCAAGGATGCAAACTTAATATTGATCAGCTTTCGGGGCACGGAACCTTTTGACTCTTATGATTGGGATACTGA TTTTGATTACTCTTGGTATGAGATTCCAAAACTGGGAAAAGTCCACATGGGATTCTTAGAAGCATTAGGTTTGGGCAACAGAGATGATACTACCACCTTC CAATATCTCCTTCAGATGAAGAACACAAATTTCAATCACGATTATGAAGGTTCTGGATCACTATTATCAAATACTGATTCTGACATGGAACAAAATGAAT TGGACCGTTCTTCTGATTCTGACAGAGCCACTGCAGTAGGTCATAAGAAGTTCCCGCCAGAAATGGTGAAGAAGACTGCATACTATACAGTGAGAAAGAA GCTCAAGAGCTTACTCGTGGAGCACAAGAATGCGAAATTTATAGTCACTGGGCATAGCTTAGGTGGTGCACTTGCTATTTTGTTCCCATCTGTGTTGGTG CTGCACCAACAGATGGATGTCATGAAAAGGTTGCTTGGGGTTTACACATTTGGGCAGCCAAGGATTGGGAACCGGCAGCTAGCAAAGTTCATGGAAGCCC ATTTGGAGTATCCTGTTCCTAAATACTTCAGGGTGGTTTACAGCTATGATCTTGTCCCTAGATTGCCTTACGATGACAAAACCTTCTTGTATAAACATTT CGGAGTGTGCCTTTATTATAACAGCCTCTATATTGAACAAAAAGTGGATGAGGAGCCAGACCCCAACCTCTATGGGTTGAGAAATGTTATTTCGGCACAT CTGAATGCTATATGGGAGTTAATAAGAAGTTTCATAATCGGCTACACCCACGGGCGAGAGTACAAAGAAAGTTGGTTCATGGTGTTGGTCAGGATAATGG GACTGGCTCTCCCTGGGATTGCTGCACATTGCCCCACAGATTATGTTAACTCGGTAAGACTGGGAAAAGAGCGAGTTGTTCAAATGTCTTCTTTCTGA
AA sequence Show only first row Show all	>Potri.001G161500.1 pacid=42789514 polypeptide=Potri.001G161500.1.p locus=Potri.001G161500 ID=Potri.001G161500.1.v4.1 annot-version=v4.1 MSTKKIGGTVFMAAATSTATKFENNTDDQEKSEESITNYLIVRPEKGGMLDLLRYLAWADIGSGVRFLESSEEGIMGEEAADHRWIILVSIIARKIISLF GKPLEYTGFVVDFFLNLLFQNGGIMGLFLNFLQGKVVTPQRDTETFISSIGHLDGRIDLYRAENLLEQIDHSVSAEKTITEEIGNRAHMDLCIMASKLAY ENAKVVRSIVVHHWKMHFVDFYNCWNDFQKEFSTQVFILCDKPKDANLILISFRGTEPFDSYDWDTDFDYSWYEIPKLGKVHMGFLEALGLGNRDDTTTF QYLLQMKNTNFNHDYEGSGSLLSNTDSDMEQNELDRSSDSDRATAVGHKKFPPEMVKKTAYYTVRKKLKSLLVEHKNAKFIVTGHSLGGALAILFPSVLV LHQQMDVMKRLLGVYTFGQPRIGNRQLAKFMEAHLEYPVPKYFRVVYSYDLVPRLPYDDKTFLYKHFGVCLYYNSLYIEQKVDEEPDPNLYGLRNVISAH LNAIWELIRSFIIGYTHGREYKESWFMVLVRIMGLALPGIAAHCPTDYVNSVRLGKERVVQMSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.001G161500 [exp]	0	1
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.007G017000 [exp]	6.00	0.7634
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.012G087100 [exp]	6.63	0.7320
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	9.16	0.7860
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.015G079100 [exp]	9.89	0.7266
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	16.43	0.7446	Pt-IAA8.1
AT1G50660			unknown protein		Potri.004G015800 [exp]	19.18	0.7139
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	20.39	0.7293
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Potri.003G131600 [exp]	23.23	0.7308
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	30.70	0.6966
AT3G01750			Ankyrin repeat family protein ...		Potri.001G335400 [exp]	33.64	0.7648

Compare expression of checked genes

Potri.001G161500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.