Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53730 590 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 559 / 0 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 441 / 4e-147 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G78980 406 / 6e-132 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 356 / 5e-113 SRF4 STRUBBELIG-receptor family 4 (.1) AT4G03390 341 / 3e-106 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 337 / 7e-105 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 308 / 6e-94 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT5G06820 278 / 1e-82 SRF2 STRUBBELIG-receptor family 2 (.1) AT1G20650 259 / 1e-79 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073700 [exp] 1090 / 0 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 638 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.004G005301 [exp] 455 / 1e-150 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 454 / 2e-150 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.014G001200 [exp] 449 / 1e-148 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.019G103900 [exp] 361 / 1e-113 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 348 / 5e-109 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 337 / 5e-105 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 337 / 7e-105 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003926 [exp] 672 / 0 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 669 / 0 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 445 / 1e-144 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10033333 [exp] 422 / 5e-138 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10020030 [exp] 419 / 6e-137 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10034790 [exp] 409 / 1e-133 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10035703 [exp] 377 / 2e-116 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10039795 [exp] 348 / 3e-109 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 340 / 1e-106 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 341 / 7e-106 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G161600.1 pacid=42791142 polypeptide=Potri.001G161600.1.p locus=Potri.001G161600 ID=Potri.001G161600.1.v4.1 annot-version=v4.1 ATGATGGAGAATTGGAGAAGAGTTGAGCTGGTGTTGACACTCTTAGTCTGCGTTCTGGGATGTGTCCATGGTGCAACAGATCCAAATGATGCTTCTGCTC TACGGGTCATGTTCAGCAGTATGAATTCACCGGGGCAGCTAACACAATGGAGTGCAAATGGTGATGATCCATGTGGGCAAAACTGGAAAGGCATTGCTTG CTCAGGCTCACGAGTTACAGAAATTAAATTGCCTGGTCTTGCACTTTCTGGGTCACTAGGGTACCAGCTTGACAGTTTGACGGCAGCAATGAACCTAGAC TTGAGTAATAATAATCTTGCAGGCGCTTTACCTTATCAACTTCCTCCAAACTTGCAGCGATTAAATCTTGCTAATAATAAACTTAGTGGAGGAATCCCTT ATTCCATTTCTCTAATGCGTTCTCTTACATACTTAAACCTTGGTCACAATCAGCTTCAGAGTCAGTTGGGAGACATGTTTGGACAACTTACTTCTCTCTC CACATTGGATGTATCATTCAACCTACTAACAGGTGACCTGCCTGAGAGTTTTAGCTCACTTTCAAGTATGAAATCAATGTATTTGCAAAGCAATCAATTT ACTGGAGCTATTGATGTCCTCGCCAATCTTCCTCTTGAAAATCTGAATGTTGCAAATAATCGTTTTACAGGTTGGATCCCTAGCCAGCTCAACAGCGTTA ATCTACAGAAGGATGGTAACAATTGGAACTCAGGGCCTGCACCCCCTCCTCCACCTGGTACACCTCCAGCCCACAAAGGCCCAAGTCCGAAATCTGGTGG CAATGACAGCTCATCAGGCAGTGGTGCTGGTGGTGGCAGCAAGAAATCAGGAATAGGTGCTGGTGGCATAGCTGGAATAATCATATCCATATTTCTTGTT GGGGGGATAGTAGCTTTCTTTTTAGTGAAGAGAAGATCCAGGAGGTCCTCGGATATAGAAAAGCTTGACAATCAACCACTTGCCCCTCTTTCTTCTACTA ATGATGTACCAGAAATGAAATCTATGCAAACTTCCTCCGCAGTCAACACCAAGATATTTGACACCTCAGCCTCAATAAATCTTAGACCTCCACCTATTGA TCGTCACAAGTCATTTGATGAGGAGGAATTTTCGCCAAAGCCTGTTGTTGTCAAGAAACCTGTTACCACTCCTATAAATGTGACATCGTACTCTGTCGCA GACCTGCAGATGGCTACTGGCAGCTTCAGTGTCGACCATCTTCTTGGTGAGGGGTTATTTGGACGTGTTTATCGAGCTGAGTTTGATGATGGGAAGGTTG TTGCTGTGAAGAAACTAGATTCAGCCACTCTGCCCAGTGATATGTCTGATGATTTTACAGAGATAGTTGCAAGCATTTCCCTGTTGCATCATCCGAACGT GACAGAACTAGTGGGTTATTGCTCAGAGCATGGACAGCATCTGCTGGTTTATGAGTTTCATAAAAATGGCTCATTGCATGACTTCCTGCATCTATCAGAT GAATACAGCAAACCTTTGATATGGAACTCCCGTGTCAAGATAGCTCTGGGGACCGCTAGGGCATTAGAGTACCTGCATGAAGTTTGTTCACCATCTATTG TTCATAAAAATATCAAGTCCGCGAATATACTATTGGACACAGAGCTCAATCCACATCTCTCAGACTCTGGCCTGGCAAGCTGTCTCCCTCATGCAGACCA GGTACTGAACCAGAATGCAGGTTCTGGATACGGTGCACCTGAGGTAGCTATGTCTGGTCATTATACTCTAAAGAGTGATGTTTACAGTTTTGGTGCAGTC ATGTTGGAGCTTCTTACTGGACGTAAACCATTTGACAGCTCAAGGCCTAGATCTGAGCAATCATTGGTTCGCTGGGCAACTCCTCAGCTCCATGACATCG ATGCTTTATCTAAAATGGTTGACCCAGAACTCAAAGGGCTCTACCCTGTCAAATCTCTCTCCCGGTTTGCTGATGTCATTGCTCTTTGTGTCCAGCCTGA GCCAGAGTTTCGACCTCCTATGTCAGAAGTGGTTCAAGCATTGGTTCGTTTAGTGCAGAGAGCTAACATGAGCAAGAGAACAATTGGAAACGAACAAGGT GAAACACCAAGAGCTGTCAATCCAGACACGCAAGACTATATGTCTTGA
AA sequence Show only first row Show all	>Potri.001G161600.1 pacid=42791142 polypeptide=Potri.001G161600.1.p locus=Potri.001G161600 ID=Potri.001G161600.1.v4.1 annot-version=v4.1 MMENWRRVELVLTLLVCVLGCVHGATDPNDASALRVMFSSMNSPGQLTQWSANGDDPCGQNWKGIACSGSRVTEIKLPGLALSGSLGYQLDSLTAAMNLD LSNNNLAGALPYQLPPNLQRLNLANNKLSGGIPYSISLMRSLTYLNLGHNQLQSQLGDMFGQLTSLSTLDVSFNLLTGDLPESFSSLSSMKSMYLQSNQF TGAIDVLANLPLENLNVANNRFTGWIPSQLNSVNLQKDGNNWNSGPAPPPPPGTPPAHKGPSPKSGGNDSSSGSGAGGGSKKSGIGAGGIAGIIISIFLV GGIVAFFLVKRRSRRSSDIEKLDNQPLAPLSSTNDVPEMKSMQTSSAVNTKIFDTSASINLRPPPIDRHKSFDEEEFSPKPVVVKKPVTTPINVTSYSVA DLQMATGSFSVDHLLGEGLFGRVYRAEFDDGKVVAVKKLDSATLPSDMSDDFTEIVASISLLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLSD EYSKPLIWNSRVKIALGTARALEYLHEVCSPSIVHKNIKSANILLDTELNPHLSDSGLASCLPHADQVLNQNAGSGYGAPEVAMSGHYTLKSDVYSFGAV MLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALSKMVDPELKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTIGNEQG ETPRAVNPDTQDYMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.001G161600 [exp]	0	1
AT5G45780			Leucine-rich repeat protein ki...		Potri.011G068700 [exp]	3.16	0.8391
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G131500 [exp]	13.19	0.8015
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.005G245800 [exp]	13.78	0.8245	SMT1.2
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	23.55	0.8111
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.001G131400 [exp]	29.15	0.8090
AT4G25360		TBL18	TRICHOME BIREFRINGENCE-LIKE 18...		Potri.012G129700 [exp]	30.39	0.8112	YLS7.2
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.017G086900 [exp]	38.65	0.8241
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	48.06	0.8068
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	50.99	0.8218
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	54.40	0.8103

Compare expression of checked genes

Potri.001G161600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.