Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPT1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53750 810 / 0 RPT1A regulatory particle triple-A 1A (.1) AT1G53780 685 / 0 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G19990 356 / 3e-120 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 355 / 9e-120 RPT6A AAA-type ATPase family protein (.1) AT1G45000 332 / 3e-111 AAA-type ATPase family protein (.1.2) AT5G43010 332 / 5e-111 RPT4A regulatory particle triple-A ATPase 4A (.1) AT3G05530 319 / 2e-105 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT4G29040 319 / 2e-105 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 319 / 3e-105 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT1G09100 315 / 4e-104 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216600 [exp] 808 / 0 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 806 / 0 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 355 / 9e-120 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 355 / 2e-119 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.002G031400 [exp] 334 / 6e-112 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 332 / 5e-111 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 332 / 6e-111 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 332 / 7e-111 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G025100 [exp] 320 / 4e-106 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031243 [exp] 806 / 0 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10031815 [exp] 795 / 0 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 358 / 7e-121 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10017972 [exp] 331 / 1e-110 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017475 [exp] 329 / 6e-110 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 330 / 9e-110 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041964 [exp] 323 / 1e-107 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10015524 [exp] 317 / 6e-106 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10031492 [exp] 319 / 1e-105 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10029887 [exp] 318 / 2e-105 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.001G161700.1 pacid=42791313 polypeptide=Potri.001G161700.1.p locus=Potri.001G161700 ID=Potri.001G161700.1.v4.1 annot-version=v4.1 ATGGGAAGTGGTGGAGATGTGGAGGATATGTTGAAGGACGAGAAGAACCCTCCCCCTCTGGATGAGGACGATATCGCTCTCCTCAAGACCTATGGCTTAG GACCGTATTCTGCGAGTATAAAGAAAGCCGAGAAGGAAATTAAGGAAATGGCTAAGAAAGTCAATGATTTGTGCGGTATCAAGGAGTCTGATACTGGTTT AGCTGCACCGAGCCAATGGGATCTTGTTTCTGACAAGCAAATGATGCAGGAGGAGCAGCCCCTTCAGGTGGCTAGGTGCACCAAGATAATTAGTCCAAAC ACCGAAGATGCCAAATACATGATAAATGTTAAGCAAATTGCCAAGTTTGTTGTTGGGTTGGGTGACAAGGTTTCCCCTACTGATATAGAAGAAGGCATGC GCGTGGGGGTCGATCGCAATAAATATCAGATACAGATTCCTCTTCCTCCCAAAATTGATCCTAGTGTGACCATGATGACAGTAGAGGAGAAGCCAGATGT GACATATAATGATGTTGGTGGATGTAAAGAGCAGATAGAAAAGATGCGAGAGGTTGTTGAGCTGCCCATGCTACACCCTGAGAAATTTGTGAAGCTTGGA ATTGATCCTCCTAAGGGTGTTCTCTGCTATGGTCCTCCTGGAACTGGTAAAACACTTTTAGCCAGAGCTGTGGCTAATAGAACTGATGCTTGTTTCATTC GGGTTATTGGAAGTGAACTCGTTCAAAAATATGTTGGTGAGGGAGCCCGGATGGTCCGTGAACTTTTTCAGATGGCCCGTTCAAAGAAGGCTTGCATTGT GTTTTTTGATGAAATTGATGCCATAGGGGGTGCACGATTTGATGATGGTGTAGGTGGAGACAATGAAGTCCAGCGTACAATGCTTGAAATCGTCAATCAA CTTGATGGGTTTGATGCCCGTGGAAACATCAAAGTTCTTATGGCAACAAACAGGCCTGACACTCTAGACCCAGCACTGTTACGCCCTGGAAGATTAGACC GTAAGGTTGAGTTTGGCCTTCCAGATTTGGAGAGTAGAGCACAGATATTTAAGATCCACACCCGAACAATGAACTGTGAAAGGGATGTCCGTTTTGAGCT TTTGGCTCGGCTCTGCCCAAATTCAACAGGAGCGGACATTAGAAGTGTGTGTACTGAAGCTGGAATGTTTGCTATTCGAGCCCGGCGGAAGACAGTAACA GAGAAGGACTTCCTTGATGCAGTGAACAAAGTAATTAAGGGATACCAAAAGTTCAGCGCAACACCGAAATATATGGTCTACAATTGA
AA sequence Show only first row Show all	>Potri.001G161700.1 pacid=42791313 polypeptide=Potri.001G161700.1.p locus=Potri.001G161700 ID=Potri.001G161700.1.v4.1 annot-version=v4.1 MGSGGDVEDMLKDEKNPPPLDEDDIALLKTYGLGPYSASIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPN TEDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEIDAIGGARFDDGVGGDNEVQRTMLEIVNQ LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRAQIFKIHTRTMNCERDVRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT EKDFLDAVNKVIKGYQKFSATPKYMVYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.001G161700 [exp]	0	1	Pt-RPT1.4
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.001G377400 [exp]	2.00	0.8353
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.008G170400 [exp]	2.82	0.8185
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	16.43	0.7572
AT5G48385			FRIGIDA-like protein (.1)		Potri.002G239900 [exp]	18.33	0.7594
AT2G24960			unknown protein		Potri.006G265900 [exp]	18.86	0.7865
AT4G19190			zinc knuckle (CCHC-type) famil...		Potri.004G236300 [exp]	20.44	0.7282
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.010G067500 [exp]	21.67	0.7862
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.016G047600 [exp]	26.70	0.7341
AT2G37035			unknown protein		Potri.006G126600 [exp]	36.76	0.6705
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Potri.006G222800 [exp]	42.42	0.6687

Compare expression of checked genes

Potri.001G161700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.