Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53760 275 / 1e-92 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037462 [exp] 258 / 6e-86 AT1G53760 326 / 5e-113 unknown protein Lus10003928 [exp] 258 / 6e-86 AT1G53760 323 / 7e-112 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10173 [poplar] [flax] Mit_KHE1 Mitochondrial K+-H+ exchange-related
Representative CDS sequence Show only first row Show all	>Potri.001G161800.2 pacid=42790560 polypeptide=Potri.001G161800.2.p locus=Potri.001G161800 ID=Potri.001G161800.2.v4.1 annot-version=v4.1 ATGAGAGCAAGATTGGTGGTGTTTCCTGTTAAAGGAAGAAACTGGTGCTTTAGCAGATCAATAGACCCTTCCCTTGAAGAGGCAGCCGCTTCCCATACTC CTTCCACTCTCAAACACCTTTGGAAAAAGATCTCTTCTTCTTCCAACTCCAGTGCCAAAAATGTGGAACTTGTTATAGATTATGCTTCCAATAAGATGGA TAAAGCATGGATGGGTCTGGAGAAGGCTCCTGAGGGAACTTTCAAGAATAAGCTTCATGGGTTGGGATTGAAGCTTTTGTCAAGGGTTAAGCCGTCTGAG ATTTTTTTGAAATCTATATCCAAGGAGGTCTCTAGTGTTGAAATTACCTACCCTTCCAGTTTAAATGCACGCCTTGTGCGTCGAAGGCTGCGACACATTG CCATGAGGGGGGCTGCCATCCACAAGAAATATTTCTATGGTTCAGTTATGCTGCTTCCATTGTCAAGTGCATTAGCTGTCTTGCCTCTACCCAACATCCC ATTCTTTTGGTTCTTATTCCGCAGTTATTCCAACTGGCGAGCTCTTAAGGGAAGTGAGAAGCTTCTTCAGCTAGTGTCAGATTGCTCATGTGCTGAAAAT TCAGCTGCTCCAAATGCCAAGGGAAGCGAGCCTGAGAGTGAGGAACCCAGGCATAAATCCCACAGTTCACAAGATTCTCTATGGGTGCTGCAACCATCAA AGGAGCTCCAGGAACTTCTTAATAAGCATGCAGATGAAAACGGCCTCAATGACTCTGCAATTTCAGATATTTGCAAGACCTTTAGTTTGAATGTCAAGGA TGTTTCGAAGTTTAGACATTCAATCTAG
AA sequence Show only first row Show all	>Potri.001G161800.2 pacid=42790560 polypeptide=Potri.001G161800.2.p locus=Potri.001G161800 ID=Potri.001G161800.2.v4.1 annot-version=v4.1 MRARLVVFPVKGRNWCFSRSIDPSLEEAAASHTPSTLKHLWKKISSSSNSSAKNVELVIDYASNKMDKAWMGLEKAPEGTFKNKLHGLGLKLLSRVKPSE IFLKSISKEVSSVEITYPSSLNARLVRRRLRHIAMRGAAIHKKYFYGSVMLLPLSSALAVLPLPNIPFFWFLFRSYSNWRALKGSEKLLQLVSDCSCAEN SAAPNAKGSEPESEEPRHKSHSSQDSLWVLQPSKELQELLNKHADENGLNDSAISDICKTFSLNVKDVSKFRHSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53760			unknown protein		Potri.001G161800 [exp]	0	1
AT5G67130			PLC-like phosphodiesterases su...		Potri.007G045700 [exp]	2.64	0.8069
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	8.00	0.7732
AT5G43830			Aluminium induced protein with...		Potri.008G158400 [exp]	8.48	0.7838
AT5G58490			NAD(P)-binding Rossmann-fold s...		Potri.009G076300 [exp]	9.48	0.7509	Pt-CCR.7
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G120800 [exp]	9.74	0.7552
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.003G212400 [exp]	11.48	0.7810
					Potri.008G213600 [exp]	12.84	0.7342
AT1G72175			RING/U-box protein with domain...		Potri.019G078800 [exp]	14.49	0.7259
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	18.89	0.7219
AT5G26910			unknown protein		Potri.005G019700 [exp]	22.36	0.7362

Compare expression of checked genes

Potri.001G161800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.