Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53800 432 / 1e-145 unknown protein AT1G53250 103 / 1e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073400 [exp] 891 / 0 AT1G53800 426 / 3e-143 unknown protein Potri.011G112300 [exp] 84 / 6e-17 AT1G53250 139 / 2e-37 unknown protein Potri.001G393700 [exp] 79 / 2e-15 AT1G53250 124 / 5e-32 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037460 [exp] 431 / 2e-143 AT1G53800 387 / 3e-126 unknown protein Lus10003930 [exp] 418 / 3e-140 AT1G53800 392 / 2e-130 unknown protein Lus10028136 [exp] 85 / 2e-17 AT1G53250 139 / 1e-37 unknown protein Lus10042840 [exp] 83 / 1e-16 AT1G53250 144 / 1e-38 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07460 [poplar] [flax] NUMOD3 NUMOD3 motif
Representative CDS sequence Show only first row Show all	>Potri.001G161900.1 pacid=42792379 polypeptide=Potri.001G161900.1.p locus=Potri.001G161900 ID=Potri.001G161900.1.v4.1 annot-version=v4.1 ATGCCTTTATTAGATATTGCTACTGCTCAGGCTTCCTTACAAAATCCTTTGGGTCCACTAAGGGCTCAATCCCATGTTCACTGCAAAGTTTTTTCAAGTC CATTTACCTTTGGTGATGATAAGAGGCTGTTATCGTTAGGGAAATGTATTGAATTCCGTAGAAAGATAAATGGTTTTGAGAGGAGTAAACTTTGGATAAA GGCTATTGCTACCTTTGAACCCCAGTCTTCGGTTCACAAGGGAGATGGAAACAGAAAAACAAGTCGTGGAAATGAACAGCTTGGTGCCAATTCAGATACC TTGACAGCGCAGGTCGAGTCTTTACGCGAAGACTCGATGACATTAGACGACAGAGAAGAATTGAGACGGAAAAGGATTTCTAAAGCAAATAAAGGGAACA CGCCATGGAACAAAGGCAGGAAACATAGCCCTGAAACCCTTCAGAAGATTAGAGAAAGAACAAGGCTTGCAATGCAGGATCCTAAGATCAAGATGAAGCT AGCCAACCTTGGACACGCTCAGAGCAAAGAGACAAGGGTGAAAATTGGGCATGGAGTTAGATTAGGGTGGCAAAAGCGCCGTGAGAAGCAGATGATGCAG GAAGGTTGTTATTTTGAATGGCAGAACTTAATCACAGAAGCTTCAAGAAGAGGCTATACTGGTGAGGGAGAGCTGCAGTGGGATTCCTACAATATCTTAA GGCAACAGCTTGAGTTTGAATGGGTGGAGAGTGTTGAAAAAAGGAAAACAACGCCTAGGCCAAAAGGTAGCAAGAGAGCACCGAAATCCCTTGAACAAAG AAGAAAAATATCAGAAGCCATTGCTGCAAAATGGGCTGATCCTGAATACCGTGAGAGAGTCTTCTCTGGCATTTCTAAATATCATGGCACACCAGTTGGA GCTGAAAGAAAGCCAAGGCGGAGGCCAAGTGGTGGTTCACAGTCTGCTAGACAGGACTCCACAAGGAGAACTAATGATACAGAAAAGGGGGATACCAGAA GCCCAACTCAGCAGTTGAGGCGAAGAAGTAAGACACCGTCATACAAAGATCCTTTGGCACGTTCGAAGTTGGAGATGATAAAGAACATCAGAGCAGAAAG AACAGCCACAGAAACCAAGAAAAATGAAGCCGTTGAACGAGCAAGGTCGTTAATTACAGAAGCTGAGAAGGCCGCTAACACTCTTGAAGCAGCTGCAGTG AGGAGCCCCATCGCTCGTGCCTCCCTAATCGAAGCCAGAAAGCTCATTGCTGAAGCAATTCAATCAATTGAATCTGTGGATACAGGGTATAGCATATCCA ATGATAGCATATCTAATGAGATTGACAGGCACCCTGACCCATCTCTTGCACCAACCAAACAGGTTAGTGAGGTTGAGAAGGAAATAAATGCAGGCAACGG AGGCTTGGGTCAAGTAGCGTTGAGACAAGTAAATGGGACCAAGATCCTGGAAACAAGTAAAGATGAAGACCTTAATTTCTGTAATTTAGCCTTCAATGAT ATACTGAATGGTGAGAAGGAACTTCACCACCTAGGCACCGGTGCATATGGTTTGCCTTCACTGAGCATGGCGAGTCCTGTAGACCATTCGAGTTCCAGAA AGCAACCTGGCCAAGTGGAACCAAACGGGAGTCTGAAGTCTGAAAAGATTAATCTACCGAATGGATCCAGAGTTCAGTATGTGAAAGAAGAGACACCTTC CAAACCGGACACTACTAAGAAATGGGTTCGTGGAAGGCTCGTTGAAGGGACAGGAGGCTGA
AA sequence Show only first row Show all	>Potri.001G161900.1 pacid=42792379 polypeptide=Potri.001G161900.1.p locus=Potri.001G161900 ID=Potri.001G161900.1.v4.1 annot-version=v4.1 MPLLDIATAQASLQNPLGPLRAQSHVHCKVFSSPFTFGDDKRLLSLGKCIEFRRKINGFERSKLWIKAIATFEPQSSVHKGDGNRKTSRGNEQLGANSDT LTAQVESLREDSMTLDDREELRRKRISKANKGNTPWNKGRKHSPETLQKIRERTRLAMQDPKIKMKLANLGHAQSKETRVKIGHGVRLGWQKRREKQMMQ EGCYFEWQNLITEASRRGYTGEGELQWDSYNILRQQLEFEWVESVEKRKTTPRPKGSKRAPKSLEQRRKISEAIAAKWADPEYRERVFSGISKYHGTPVG AERKPRRRPSGGSQSARQDSTRRTNDTEKGDTRSPTQQLRRRSKTPSYKDPLARSKLEMIKNIRAERTATETKKNEAVERARSLITEAEKAANTLEAAAV RSPIARASLIEARKLIAEAIQSIESVDTGYSISNDSISNEIDRHPDPSLAPTKQVSEVEKEINAGNGGLGQVALRQVNGTKILETSKDEDLNFCNLAFND ILNGEKELHHLGTGAYGLPSLSMASPVDHSSSRKQPGQVEPNGSLKSEKINLPNGSRVQYVKEETPSKPDTTKKWVRGRLVEGTGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53800			unknown protein		Potri.001G161900 [exp]	0	1
AT5G14460			Pseudouridine synthase family ...		Potri.001G343100 [exp]	9.38	0.9195
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	9.69	0.9386
AT1G08530			unknown protein		Potri.013G052700 [exp]	12.00	0.9210
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	17.17	0.9292
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	18.52	0.9260
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	22.89	0.9341
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	26.43	0.9314
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G019000 [exp]	28.21	0.9311
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	35.56	0.9228
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	35.87	0.9241

Compare expression of checked genes

Potri.001G161900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.