Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATL3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53820 149 / 6e-43 RING/U-box superfamily protein (.1) AT1G72310 145 / 1e-41 ATL3 RING/U-box superfamily protein (.1) AT5G05280 94 / 3e-23 RING/U-box superfamily protein (.1) AT3G16720 96 / 6e-23 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G15975 94 / 6e-23 RING/U-box superfamily protein (.1) AT3G14320 92 / 1e-22 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G18773 89 / 7e-21 RING/U-box superfamily protein (.1) AT1G49220 87 / 6e-20 RING/U-box superfamily protein (.1) AT1G49200 86 / 7e-20 RING/U-box superfamily protein (.1) AT1G49210 85 / 2e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073300 [exp] 311 / 7e-107 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 111 / 9e-29 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.010G010500 [exp] 107 / 3e-27 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.011G063100 [exp] 92 / 3e-22 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.009G073900 [exp] 90 / 4e-21 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.013G091300 [exp] 88 / 8e-21 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 87 / 2e-20 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 84 / 1e-19 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 86 / 3e-19 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006493 [exp] 97 / 3e-23 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10037490 [exp] 98 / 5e-23 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10022743 [exp] 86 / 3e-20 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10023617 [exp] 86 / 3e-19 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10004460 [exp] 86 / 4e-19 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10033515 [exp] 84 / 4e-19 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10020859 [exp] 84 / 9e-19 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10029037 [exp] 81 / 2e-18 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10012745 [exp] 84 / 3e-18 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10013210 [exp] 80 / 9e-18 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G162000.1 pacid=42789087 polypeptide=Potri.001G162000.1.p locus=Potri.001G162000 ID=Potri.001G162000.1.v4.1 annot-version=v4.1 ATGGGGAGATTAGATGACTCAGCGACAATGGAAATAACCGGCAAGGTTATGGTTGTTGCAATTGTAATTCTATTCTTGGTGGTGGTTTTTGTTATCTTTC TACATCTTTATGCAAAATGGTTTTGGTGGCGCATTGAAGAGCCCGCTCACCCTCAACAATCTCGCCGCCGCCAACGCCGACGCTATGTCTTTAACCCTGG TCAAGACCCAGTGAGAAGAGGGCTAGAGCTCTCTATACTGAGATCCCTACCACTAGTGATTTTCCAGCCCAAAGATTTCCCAGGTGGACTAGAATGTGCT GTTTGCTTATCTGATGCTGTAGAAGGAGAAAAGGTCAGGTTGTTGCCTAAATGCAACCATGGGTTCCATCTTGATTGTATTGACATGTGGTTCCAGTCCT ATTCTACTTGTCCTCTATGTAGAAGCTCGGTAGCACCACAAGCTCAATGCGCTAGTGGTGCCAATAACAACAATGACCTGGAGGTGAATATTCAGTCTCC GGAGGAAATTTTGATTTCTGGGTATTCAATAGAATCTCCAGATTTTCCAACAAACGTGTTGTTTTGGGGGGATCAGACTCTTGTAAGCACTGGGGGCGGT TCCTTGGAAGAAGGACCTTCTTCTTCAGCTTCTTCCGCGCCATCATCTTCAGCTGGTGCTAGGCATGATGAGATGCTTGTTATTGATGTTCCTGTGCAAA TTACCGATAATCTTGCTGAGGATCAGGAATCAAAGTTGCCAACGCCTACGCGGTTGAGGTCATTGAAAAGACTTTTGAGCAGGGAGAAAAGGTTACCTCC TAATTGTTCTAATGGTTCTGTTGATGTTTAG
AA sequence Show only first row Show all	>Potri.001G162000.1 pacid=42789087 polypeptide=Potri.001G162000.1.p locus=Potri.001G162000 ID=Potri.001G162000.1.v4.1 annot-version=v4.1 MGRLDDSATMEITGKVMVVAIVILFLVVVFVIFLHLYAKWFWWRIEEPAHPQQSRRRQRRRYVFNPGQDPVRRGLELSILRSLPLVIFQPKDFPGGLECA VCLSDAVEGEKVRLLPKCNHGFHLDCIDMWFQSYSTCPLCRSSVAPQAQCASGANNNNDLEVNIQSPEEILISGYSIESPDFPTNVLFWGDQTLVSTGGG SLEEGPSSSASSAPSSSAGARHDEMLVIDVPVQITDNLAEDQESKLPTPTRLRSLKRLLSREKRLPPNCSNGSVDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53820			RING/U-box superfamily protein...		Potri.001G162000 [exp]	0	1	Pt-ATL3.2
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.008G010800 [exp]	1.00	0.9365
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.010G197200 [exp]	2.00	0.9082
AT3G48970			Heavy metal transport/detoxifi...		Potri.015G144300 [exp]	5.38	0.8848
AT1G03180			unknown protein		Potri.005G208700 [exp]	12.24	0.9246
AT4G14805			Bifunctional inhibitor/lipid-t...		Potri.010G085000 [exp]	16.24	0.9101
AT2G31690			alpha/beta-Hydrolases superfam...		Potri.014G150700 [exp]	21.79	0.9052
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.010G071400 [exp]	27.23	0.9019
AT4G23330			unknown protein		Potri.001G103800 [exp]	27.49	0.8112
AT4G15790			unknown protein		Potri.010G024600 [exp]	31.08	0.8531
AT2G47920			Kinase interacting (KIP1-like)...		Potri.002G207700 [exp]	31.32	0.8100

Compare expression of checked genes

Potri.001G162000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.