Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 792 / 0 ATPME3 pectin methylesterase 3 (.1) AT1G53830 783 / 0 ATPME2 pectin methylesterase 2 (.1) AT5G53370 453 / 1e-153 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT2G45220 439 / 6e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 439 / 8e-148 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 435 / 8e-147 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 426 / 6e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 425 / 1e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 409 / 6e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 407 / 4e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 1038 / 0 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 762 / 0 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 726 / 0 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 725 / 0 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 693 / 0 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 691 / 0 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 681 / 0 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 630 / 0 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 536 / 0 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003933 [exp] 769 / 0 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 740 / 0 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10013344 [exp] 703 / 0 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10037458 [exp] 530 / 0 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10038917 [exp] 470 / 1e-160 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 443 / 3e-151 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 439 / 1e-148 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 437 / 3e-148 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 439 / 2e-147 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 434 / 1e-146 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.001G162400.1 pacid=42793111 polypeptide=Potri.001G162400.1.p locus=Potri.001G162400 ID=Potri.001G162400.1.v4.1 annot-version=v4.1 ATGGCCCAGGACAAGCATGGCTTGACTGGAATATCAGATTCTGGCAATCACATTTCCATCTTAAAGAAAAACAAGAGACTCTTCTTAGCCAGTTTTGCTG CTTTTTTTCTAGTTGCCACAATAGCTGCCGTTGTCACCGGTGTAAATTCACACAAGAACGGCAAGAATGAAGGCGCTCATGCCATCCTCAAATCCGCCTG CAGCTCCACTCTTTATCCTGAATTGTGCTACTCAGCTATTGCCACTGTCCCTGGAGTCACTAGCAATTTAGCTAGCCTAAAAGATGTTATCGAACTTTCC ATAAACCTCACCACCAAAACTGTTCAACAAAATTATTTCACTGTAGAGAAGCTCATAGCCAAAACCAAACTCACCAAAAGAGAAAAGACTGCTCTCCATG ATTGTTTGGAGACTATAGACGAGACTCTTGATGAGTTGCACGAGGCTCTGGTGGATATCAATGGGTACCCCGACAAGAAATCGCTCAAAGAACAAGCTGA TAACCTCAAAACCCTGTTGAGCTCTGCCATAACCAACCAAGAAACATGCTTGGATGGTTTCTCTCACGATGGAGCAGATAAAAAGGTGCGAAAAGCTTTA TTGAAGGGTCAAACCCACGTTGAAAAAATGTGCAGTAATGCACTGGCAATGATCAGGAACATGACAGACACTGACATTGCCAACGAGCTCCAGAACACAA ACAGGAAGCTCAAGGAGGAAAAGGAAGGTAATGAAAGAGTGTGGCCGGAGTGGATGTCAGTAGCAGACAGGAGGCTGCTGCAGTCATCATCCGTGACTCC AAATGTGGTGGTGGCGGCTGACGGAAGTGGGGATTACAAGACAGTATCAGAAGCAGTAGCTGCTGTACCAAAGAAAAGCAGCACGAGGTACGTAATTCAA ATCAAGGCCGGAGTTTACAGGGAAAATGTGGAAGTACCAAAGGATAAGCATAACGTAATGTTCTTAGGAGATGGAAGAAAAACAACCATCATTACAGCAA GTAGGAATGTGGTTGATGGCAGCACAACCTTCAAGTCTGCCACGGTTGCTGCGGTAGGTCAAGGATTCCTAGCCAGGGGCGTAACTTTCGAAAACACAGC TGGTCCCTCTAAGCACCAAGCCGTGGCGCTGAGGGTCGGGTCTGACCTCTCAGCATTTTACGAATGTGACATGCTAGCCTACCAAGACACCCTCTATGCC CACTCAAACCGTCAGTTTTTCATAAATTGCTTGATAGCAGGCACCGTTGATTTCATTTTCGGCAATGCTGCTGCTGTTTTCCAAGACTGTGACATCCATG CTCGACGCCCCGATTCAGGCCAAAAGAACATGGTAACTGCCCAAGGCAGGACTGACCCTAATCAGAACACTGGCATTGTGATTCAAAAGAGTAGGATTGG TGCCACTTCTGACTTGCTACCTGTTCAGAGCAGTTTCCCAACGTATCTTGGGAGGCCCTGGAAGGAGTATTCAAGGACTGTCATCATGCAATCATCCATA ACTGATGTGATACAACCAGCCGGGTGGCACGAGTGGAGTGGCACCTTTGCACTGAGCACATTGTTTTATGCAGAGTATCAGAATTCTGGGTCTGGTGCTG GGACCTCCAGTAGGGTCACATGGGAAGGATACAAAGTGATTACAAGTGCAACTGAGGCTCAAGCGTTCGCCCCTGGAAATTTCATTGCTGGCAGTAGCTG GTTGGGATCTACCTCCTTCCCCTTCTCTCTTGGTTTGTAA
AA sequence Show only first row Show all	>Potri.001G162400.1 pacid=42793111 polypeptide=Potri.001G162400.1.p locus=Potri.001G162400 ID=Potri.001G162400.1.v4.1 annot-version=v4.1 MAQDKHGLTGISDSGNHISILKKNKRLFLASFAAFFLVATIAAVVTGVNSHKNGKNEGAHAILKSACSSTLYPELCYSAIATVPGVTSNLASLKDVIELS INLTTKTVQQNYFTVEKLIAKTKLTKREKTALHDCLETIDETLDELHEALVDINGYPDKKSLKEQADNLKTLLSSAITNQETCLDGFSHDGADKKVRKAL LKGQTHVEKMCSNALAMIRNMTDTDIANELQNTNRKLKEEKEGNERVWPEWMSVADRRLLQSSSVTPNVVVAADGSGDYKTVSEAVAAVPKKSSTRYVIQ IKAGVYRENVEVPKDKHNVMFLGDGRKTTIITASRNVVDGSTTFKSATVAAVGQGFLARGVTFENTAGPSKHQAVALRVGSDLSAFYECDMLAYQDTLYA HSNRQFFINCLIAGTVDFIFGNAAAVFQDCDIHARRPDSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLLPVQSSFPTYLGRPWKEYSRTVIMQSSI TDVIQPAGWHEWSGTFALSTLFYAEYQNSGSGAGTSSRVTWEGYKVITSATEAQAFAPGNFIAGSSWLGSTSFPFSLGL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162400 [exp]	0	1
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	2.64	0.8765
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	2.82	0.8762
AT2G20515			unknown protein		Potri.002G038200 [exp]	3.87	0.8566
					Potri.016G013000 [exp]	5.47	0.8340
AT3G17090			Protein phosphatase 2C family ...		Potri.008G104300 [exp]	8.71	0.7975
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	9.21	0.8456
					Potri.018G101800 [exp]	10.48	0.8228
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	11.22	0.8324
AT1G07790		HTB1	Histone superfamily protein (....		Potri.010G231300 [exp]	11.83	0.8531
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	13.41	0.8160

Compare expression of checked genes

Potri.001G162400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.