Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 551 / 0 ATPME3 pectin methylesterase 3 (.1) AT1G53830 535 / 0 ATPME2 pectin methylesterase 2 (.1) AT3G43270 391 / 6e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 391 / 2e-129 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G11580 389 / 9e-129 ATPMEPCRA methylesterase PCR A (.1) AT4G02300 382 / 2e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 379 / 2e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 374 / 2e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 370 / 1e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 365 / 7e-119 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162500 [exp] 1087 / 0 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 694 / 0 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 681 / 0 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 663 / 0 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 652 / 0 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 627 / 0 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 608 / 0 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 559 / 0 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 426 / 3e-143 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039314 [exp] 556 / 0 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10013344 [exp] 548 / 0 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10003933 [exp] 538 / 0 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 412 / 6e-138 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 402 / 3e-135 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 404 / 6e-135 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 395 / 4e-131 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 387 / 1e-128 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 379 / 5e-124 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 366 / 2e-120 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.001G162600.1 pacid=42793691 polypeptide=Potri.001G162600.1.p locus=Potri.001G162600 ID=Potri.001G162600.1.v4.1 annot-version=v4.1 ATGATCCAAGAGGATCATGGAAGCTTGACCGAAATATCAGATTCTGGCAAGCACATTTCCTTCTCCCAAAAAAACAAAAGCCTCTCTTTAGCTCTCTTTG TTTCTCTCTTGCTTGTCGCCACTATAGCTGCCGTTGTTACTCCCGTAAATTCACAGAACTCCAACAAAAATGACGCTGCTCATTCCATTATAAAGATGTC ATGCAGCTCCACAAGATACCCAGAACTGTGCTACTCTGCGATTGCCAATGGCCCTGGAGCTGCTGCCAGTTTGGCAGCTATCAACGACGAAAACGATGTT CTTATAGAATCCATAAGAGCCACTCAACAAGCTATTGACACCAATACCGCCGGTATAGAGAGTTACAAAACCACCAATAAGATGAAACTCACCAATCAGC AAAATGATGCTCTCGATACTTCCACGGACAACAATGAATTGTCTCAAAGTGATTTACAAAATGCTATAAACAGTCTCAATTACTATACTAACGAGATTCC TCTTAGCGATCAAGATACTGAGCCGGACATCAATACCCCACTGAGTTCTTGCATAACCTACCAAGACACGATCATGGATGGTTTCTCTCATACCGCCGCA GACAAGCAGGTGCGTAAAGATATTTCGGATGGAGTAGATAATGTTAGAAAAATGTGCATGAATACTCTGGCAATGAACATGAACATGACAGCCACTCGCA TTGCCAATGAGCTTAAAACCACAAAGAGGAATCTCAAGGAGGAAAACAGTAGAAATGAAAGTGGGTGGCCAAAGTGGTTGTCAGTAGCCAACAGGAGGTT GTTGCAGTCATCATCATTGACACCAGATGTGGTGGTGGCTGCTGATGGCAGCGGGAATTATAGTACAGTATCAGCTGCAGCTGCTGCTGCCCCAACGAGA AGCAGTAAGAGGTACATTATCAGAATCAAGGCAGGTGTTTACAGGGAAACTGTGCAAGTACCAATCAATAAGACTAACTTAATGTTTCTTGGAGATGGAA GAAGGAAAACGATCATTACAGCAAGTAGGAGTGTGGTGGATGGCATCACAGCCTTCCGTTCTGCCACCGTTGCCGTAATGGGTGAAGGATTCCTGGCCAG GGACATCGCCTTCCAAAACACAGCCGGCCCGTCCAACCGCCAAGCCGTGGCGTTGCGTGTTAGTTCTGACCGCGCGGCATTCTACAAATGCAACGTGCTT GGATACCAAGACACCCTCCATGTCCACGCAAATCGTCAGTTCTTCATAAATTGTTTGATAGCAGGCACGGTCGATTTCATCTTCGGCAATTCCGCAGCTG TTTTCCAAGATTGTGATATCCATGCTCGTCGTCCCAATCCAGGCCAAACAATCACAATAACAGCCCAAGGGAGGAGCGATCCTAATCAAAACACTGGCAT TGTAATTCAGAAAAGCAGGATTCACGCCACTTCTGATCTACTGCCAGTCAGGAGCAATTTCTCTGCGTATCTCGGTAGACCCTGGAAGGAGTATTCAAGG ACGGTTGTCATGCAATCATCCATAAGTGATGTGATAAACCCGGCTGGGTGGCTCGAGTGGAGGGGAAAATATGCACTGAACACGTTGTATTACGGAGAGT ATAATAACAGCGGGGCTGGTGCTGCAACCTCTGAAAGGGTCAACTGGAAAGGATACAAGGTGATTAATGCTGCAACTGAAGCTAAAAGCTTTACTCCTCG CAATTTCATTGCTGGTAGTACGTGGTTGAAATCCACTACCTTCCCATTCTCTTTGGATCTCTAA
AA sequence Show only first row Show all	>Potri.001G162600.1 pacid=42793691 polypeptide=Potri.001G162600.1.p locus=Potri.001G162600 ID=Potri.001G162600.1.v4.1 annot-version=v4.1 MIQEDHGSLTEISDSGKHISFSQKNKSLSLALFVSLLLVATIAAVVTPVNSQNSNKNDAAHSIIKMSCSSTRYPELCYSAIANGPGAAASLAAINDENDV LIESIRATQQAIDTNTAGIESYKTTNKMKLTNQQNDALDTSTDNNELSQSDLQNAINSLNYYTNEIPLSDQDTEPDINTPLSSCITYQDTIMDGFSHTAA DKQVRKDISDGVDNVRKMCMNTLAMNMNMTATRIANELKTTKRNLKEENSRNESGWPKWLSVANRRLLQSSSLTPDVVVAADGSGNYSTVSAAAAAAPTR SSKRYIIRIKAGVYRETVQVPINKTNLMFLGDGRRKTIITASRSVVDGITAFRSATVAVMGEGFLARDIAFQNTAGPSNRQAVALRVSSDRAAFYKCNVL GYQDTLHVHANRQFFINCLIAGTVDFIFGNSAAVFQDCDIHARRPNPGQTITITAQGRSDPNQNTGIVIQKSRIHATSDLLPVRSNFSAYLGRPWKEYSR TVVMQSSISDVINPAGWLEWRGKYALNTLYYGEYNNSGAGAATSERVNWKGYKVINAATEAKSFTPRNFIAGSTWLKSTTFPFSLDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162600 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162500 [exp]	1.00	0.9948	PME2.16
AT3G52490			Double Clp-N motif-containing ...		Potri.008G017600 [exp]	8.83	0.8417
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	10.72	0.8382
AT3G52500			Eukaryotic aspartyl protease f...		Potri.016G071900 [exp]	10.81	0.8079
AT1G53440			Leucine-rich repeat transmembr...		Potri.006G014232 [exp]	11.48	0.8356
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.004G081000 [exp]	13.41	0.8395
AT2G27770			Plant protein of unknown funct...		Potri.004G187600 [exp]	13.41	0.8012
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011200 [exp]	15.09	0.8098
AT5G08350			GRAM domain-containing protein...		Potri.005G088200 [exp]	16.70	0.8208
AT1G30080			Glycosyl hydrolase superfamily...		Potri.004G132700 [exp]	18.97	0.8386

Compare expression of checked genes

Potri.001G162600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.