Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53840 659 / 0 ATPME1 pectin methylesterase 1 (.1) AT3G14300 553 / 0 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G04960 435 / 3e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 403 / 8e-135 RHS12 root hair specific 12 (.1) AT1G53830 376 / 3e-124 ATPME2 pectin methylesterase 2 (.1) AT5G53370 366 / 4e-120 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 358 / 4e-117 ATPME3 pectin methylesterase 3 (.1) AT3G05610 359 / 2e-116 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 360 / 4e-116 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 353 / 4e-115 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072700 [exp] 904 / 0 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 528 / 0 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.010G247600 [exp] 461 / 1e-157 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.008G011200 [exp] 452 / 6e-154 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.001G162400 [exp] 379 / 2e-125 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 372 / 2e-122 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.012G014500 [exp] 372 / 2e-122 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 370 / 2e-122 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.015G013700 [exp] 372 / 3e-122 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003934 [exp] 664 / 0 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10037456 [exp] 456 / 8e-159 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10033399 [exp] 414 / 8e-139 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10034859 [exp] 386 / 4e-128 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10039927 [exp] 369 / 1e-120 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 359 / 5e-117 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 355 / 3e-116 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10022412 [exp] 362 / 5e-116 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 354 / 8e-116 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 353 / 2e-115 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.001G162700.3 pacid=42790795 polypeptide=Potri.001G162700.3.p locus=Potri.001G162700 ID=Potri.001G162700.3.v4.1 annot-version=v4.1 ATGGTAAAGTACGTAGACGAGGTCGAGCAGCAAGCCTTCCGGCGAAAGACACGTAAGCGTTTGATCATTGTCGTTGTCTCCTCCATTGTTCTTTTAGCTG TGATCATCGGTGCTGTTATAGGAGTTGTTTTGCACAACCGAAACAACAACTCTTCGTCCAACCCGGTCCCTCCTCCCGAGTTGACTCCAGCCGCTTCACT CAAGGCTGTTTGCAGTGTGACCCGGTACCCAACCTCATGTTTCTCCAGCATCTCTGCCCTTGAAACAGGAAACACTACGGACCCAGAGGAGCTTTTCAAG CTCTCTTTACATGTTGCTATGAATGAGCTGTCCAAGCTCAAAGACTACCCGGATAAGCTCATACAGAGCATTGATGACGCTACCCTTCAAGATGCTTTGA AAGTCTGTGCCACCGTGTTTGATGATGCTGTAGATAGACTCAACGACTCCATATCATCGATGGCTGTCGGTGAAGGTGGAAAGATTTTATCAACAGCTAA GATGGATGACTTGAAGACTTGGATCAGCACTACAATTACTGACCAAGAAACATGTTTAGATGCGTTGCAAGAGTTGAACGTTACAAAGCATTTTAACCAG ACACTTGTTGATCATGTCAAGGCAGAAATGGAGAACTCTACCGAGTTTGTTAGCAATAGTTTGGCTATTGTTGCAAAAATCCTGGGTTTGCTTTCTGATT TCAACATCCCAATTCATAGAAGGTTACTTGGATTTGAAAGAACCCATAATTCAAGGTTTCCACATTGGGTTGGTTTAGGAGATAGAAGACTACTTCAGAT GTCTACTCCGAAGCCGGATGTCACGGTGGCGAAAGACGATAGCGGGGACTGCACGACCTTACGTGAGGCAGTAGGAAAAATTCCAAAAAAGAGTAAATCA AGATTCATCATATATGTTAAGGAAGGTGAATATTTGGAGAATGTGATTTTGGATAAAAGCAAGTGGAATGTAATGATCTATGGTGATGGGAAGGACAAGA CTATTATTTCAGGCAGTCTGAATTTTGTTGATGGAACTCCCACCTTCTCTACTGCCAGTTTCGCTGTTGCGGGCAAGAGCTTCTTCGCCAGAGATATCAA GTTCATTAACACGGCCGGGGCAGAAAAGCACCAAGCAGTGGCCTTCAGGTCCGGCTCGGACATGTCAGTACTTTTCCGGTGTGCATTTGATGGATTTCAG GACACACTCTATGCTCACTCAAATCGACAATTCTACCGTGACTGTGACATTACCGGCACCATTGGCTTCATGTTCGGCAATGCCGCTGTCGTGTTCCAAA ATTGCAACATCCAGCCCAGGCAACCGTTACCTAACCAATTCAACACCATCACAGCTCAGGGAAAGAAGGATCCTAATCAAAACACTGGCATTTCAATTCA GAATTGTAAATTTTCTGCATCGGGTAATGTTACAGCTCCAACTTACCTTGGTAGGCCTTGGAAAGATTATTCCACTGCTGTCATTATGCAGTCCGATATT GGGCCGTTCTTGAGACCATCAGGTTGGATGTCATGGGTCAGTGGTGTGGATCCACCTGCCACTATATTTTATGCAGAGTATCAGAATACTGGGCCTGGTG CTAGAGTGGATGGAAGGGTCAAATAG
AA sequence Show only first row Show all	>Potri.001G162700.3 pacid=42790795 polypeptide=Potri.001G162700.3.p locus=Potri.001G162700 ID=Potri.001G162700.3.v4.1 annot-version=v4.1 MVKYVDEVEQQAFRRKTRKRLIIVVVSSIVLLAVIIGAVIGVVLHNRNNNSSSNPVPPPELTPAASLKAVCSVTRYPTSCFSSISALETGNTTDPEELFK LSLHVAMNELSKLKDYPDKLIQSIDDATLQDALKVCATVFDDAVDRLNDSISSMAVGEGGKILSTAKMDDLKTWISTTITDQETCLDALQELNVTKHFNQ TLVDHVKAEMENSTEFVSNSLAIVAKILGLLSDFNIPIHRRLLGFERTHNSRFPHWVGLGDRRLLQMSTPKPDVTVAKDDSGDCTTLREAVGKIPKKSKS RFIIYVKEGEYLENVILDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTASFAVAGKSFFARDIKFINTAGAEKHQAVAFRSGSDMSVLFRCAFDGFQ DTLYAHSNRQFYRDCDITGTIGFMFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQNCKFSASGNVTAPTYLGRPWKDYSTAVIMQSDI GPFLRPSGWMSWVSGVDPPATIFYAEYQNTGPGARVDGRVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.001G162700 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Potri.008G063400 [exp]	5.00	0.7647
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002501 [exp]	10.39	0.7865
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	14.69	0.8176
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	16.21	0.8194
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.002G164700 [exp]	16.43	0.8108
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Potri.016G001700 [exp]	16.88	0.7815
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.005G228500 [exp]	17.32	0.7611
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Potri.010G242300 [exp]	19.69	0.7306
AT1G45688			unknown protein		Potri.002G124600 [exp]	20.90	0.7765
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Potri.006G089000 [exp]	22.00	0.7681

Compare expression of checked genes

Potri.001G162700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.