Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALAAT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17290 828 / 0 ALAAT1 alanine aminotransferas (.1) AT1G72330 826 / 0 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G23310 488 / 2e-170 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G70580 478 / 4e-166 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) AT4G26200 85 / 1e-17 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT2G20610 85 / 1e-17 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G36160 82 / 2e-16 Tyrosine transaminase family protein (.1) AT4G28420 81 / 3e-16 Tyrosine transaminase family protein (.1.2) AT4G28410 81 / 3e-16 Tyrosine transaminase family protein (.1) AT4G11280 81 / 3e-16 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072600 [exp] 898 / 0 AT1G72330 838 / 0.0 alanine aminotransferase 2 (.1.2.3) Potri.008G187400 [exp] 474 / 9e-165 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.010G045100 [exp] 468 / 2e-162 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.018G067000 [exp] 86 / 5e-18 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 85 / 2e-17 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.017G014100 [exp] 84 / 2e-17 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 82 / 2e-16 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 82 / 2e-16 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.002G163700 [exp] 81 / 3e-16 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037455 [exp] 845 / 0 AT1G72330 893 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10003935 [exp] 839 / 0 AT1G72330 880 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10036850 [exp] 467 / 2e-161 AT1G70580 872 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10006203 [exp] 465 / 4e-161 AT1G70580 868 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10026692 [exp] 464 / 6e-161 AT1G70580 878 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10004623 [exp] 454 / 3e-156 AT1G70580 865 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10033659 [exp] 94 / 2e-20 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10032654 [exp] 94 / 2e-20 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 91 / 6e-19 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017703 [exp] 89 / 9e-19 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.001G162800.1 pacid=42788039 polypeptide=Potri.001G162800.1.p locus=Potri.001G162800 ID=Potri.001G162800.1.v4.1 annot-version=v4.1 ATGGCTCGTGTTTCTCTTGATACCATAAATCCCAAGGTTTTGAAATGCGAATATGCTGTCCGTGGTGAGATTGTCACCCTTGCACAGGCGGTACAGGAAG AGTTGAAGTCTAAGCCAGGCTCTCGTCCCTTTGATGAGATACTTTACTGCAATATTGGAAATCCTCAGTCTCTTGGTCAGCAGCCTATTACCTTTTTCCG CGAGGTTCTTGCATTATGTGACCATCCTTCCATTCTGGACAAAAGTGAAACTCGGGGTTTGTTCAGTGCTGATGCCATAGAGAGAGCTCGGCAGATTCTT GATCAAATTCCTGGAAGGGCCACTGGTGCTTATAGTCACAGTCAGGGAATCAAAGGACTGCGTGATGCAATTGCTGCTGGAATTGAAGCTCGCGATGGCT TTCCTGCTGATCCAAATGATATTTTCTTGACAGATGGTGCAAGCCCAGCGGTCCACATGATGATGCAGTTACTGATACGATCAGAGAAGGATGGAATACT TTGTCCCATTCCTCAGTATCCCTTGTACTCTGCTTCAATTGCTCTCCATGGTGGTACTCTGGTTCCCTACTATCTTGATGAAGCAACTGGATGGGGCTTG GAAGTTTCTGAGCTGAAGAAGCAATGGGCAGATGCAAAGTCCAAGGGAATTACTCCTAGGGCCTTGGTTGTGATAAATCCAGGCAACCCAACAGGGCAGG TTCTTGCAGAGAATAATCAGAAAGAGATCGTGGACTTCTGCAAGAAAGAAGGTCTTGTTCTTCTTGCAGACGAGGTTTATCAGGAAAATGTTTATGTTCC TGAAAAGAAGTTCCACTCATTTAAGAAGGTTGCTCGCTCTATGGGGTATGGTGAAAAAGATATATCTGTGGTATCTTTTCAGTCTGTCTCTAAAGGTTAC TATGGAGAGTGTGGAAAGAGAGGAGGTTACATGGAAGTCACTGGGTTTGGTCCTGAAATAAGGGAGCAAATATACAAACTTGCATCTGTGAATCTATGCT CCAACATTTCTGGTCAAATTCTTGCAAGTCTTGTCATGAGCCCACCTAAGGTTGGAGATGAATCATATGAATCATACTCTGCAGAGAAAGATGGAATCCT CTCTTCTTTAAAGAGACGTGCAAAGACTCTGGAAGACGCATTCAATAAGCTAGACGGTGTAACATGCAACAAAGCAGAAGGAGCAATGTATCTCTTCCCC TGCATCCGCTTGTCTGAAAAGGCAATTAAAGCTGCAGAAGCTGCAAAAACAACTCCGGATAACTTCTACTGTCGCTGCCTACTCAATGCCACAGGAATTG TTTTTGTTCCTGGCTCTGGCTTTAGGCAGGTTCCGGGCACCTGGCATTTTAGGTGCACCATACTGCCTCAAGAAGATAAGATTCCAGCTGTTGTCTCCCG TCTCACGGAGTTTCACAAGAGTTTCATGGAGGAGTTTCGCGAGTGA
AA sequence Show only first row Show all	>Potri.001G162800.1 pacid=42788039 polypeptide=Potri.001G162800.1.p locus=Potri.001G162800 ID=Potri.001G162800.1.v4.1 annot-version=v4.1 MARVSLDTINPKVLKCEYAVRGEIVTLAQAVQEELKSKPGSRPFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDKSETRGLFSADAIERARQIL DQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL EVSELKKQWADAKSKGITPRALVVINPGNPTGQVLAENNQKEIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVARSMGYGEKDISVVSFQSVSKGY YGECGKRGGYMEVTGFGPEIREQIYKLASVNLCSNISGQILASLVMSPPKVGDESYESYSAEKDGILSSLKRRAKTLEDAFNKLDGVTCNKAEGAMYLFP CIRLSEKAIKAAEAAKTTPDNFYCRCLLNATGIVFVPGSGFRQVPGTWHFRCTILPQEDKIPAVVSRLTEFHKSFMEEFRE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17290		ALAAT1	alanine aminotransferas (.1)		Potri.001G162800 [exp]	0	1	Pt-ALAAT1.1
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.005G119500 [exp]	13.07	0.6739	Pt-MPK7.1
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076601 [exp]	14.69	0.6311
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.001G285900 [exp]	16.37	0.6439
					Potri.001G172000 [exp]	39.33	0.6326
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	53.15	0.5979
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.008G172500 [exp]	78.28	0.5966
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.003G168000 [exp]	83.13	0.5370	Pt-G6PD.1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.017G122300 [exp]	91.73	0.5813
AT3G28960			Transmembrane amino acid trans...		Potri.017G083700 [exp]	128.31	0.5537
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	199.90	0.5298

Compare expression of checked genes

Potri.001G162800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.