Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53860 333 / 6e-110 Remorin family protein (.1) AT2G02170 111 / 2e-26 Remorin family protein (.1.2) AT1G30320 95 / 1e-20 Remorin family protein (.1) AT1G67590 91 / 6e-20 Remorin family protein (.1.2) AT1G45207 42 / 0.001 Remorin family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098000 [exp] 88 / 2e-18 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.010G056800 [exp] 84 / 2e-17 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.001G358600 [exp] 85 / 3e-17 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.008G178300 [exp] 81 / 1e-16 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.014G027900 [exp] 82 / 2e-16 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.008G144300 [exp] 79 / 1e-15 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.005G138500 [exp] 65 / 5e-11 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.002G125200 [exp] 65 / 6e-11 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.002G157700 [exp] 42 / 0.0002 AT3G61260 167 / 2e-52 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003936 [exp] 311 / 6e-99 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10037454 [exp] 248 / 1e-75 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10005708 [exp] 92 / 2e-19 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10023284 [exp] 90 / 7e-19 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10038522 [exp] 85 / 2e-18 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10042649 [exp] 84 / 5e-17 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10009750 [exp] 76 / 3e-14 AT1G45207 445 / 8e-151 Remorin family protein (.2) Lus10010227 [exp] 68 / 6e-12 AT1G45207 441 / 6e-149 Remorin family protein (.2) Lus10027302 [exp] 66 / 2e-11 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10039007 [exp] 63 / 2e-10 AT4G36970 213 / 4e-65 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.001G163000.1 pacid=42790602 polypeptide=Potri.001G163000.1.p locus=Potri.001G163000 ID=Potri.001G163000.1.v4.1 annot-version=v4.1 ATGGATCTCACTGCTCCAAAATACTTTCAACCTCCTCCTGTTTTTGTTCCTAATGGGGAACCAGCATTGGAGACCAAGACCAGCACAAGCTTCTATGTGA AGGTTAAGGAAAATCCATTTGCAGACTCCTTTCAAGACCCACTGTGCAAGCTCAATCTCAAGGAGACATCTGAGTTTGTCAAGTCATTTCCAATGGCAAA TAGCAGCGCCGAATGCAGAGGATTTCTTGAAGTTTCAGTTCCAAGGAGAACAGAGGGAGTGAACTCAGTTACACAGAGAAGAGTAGAAGCTCCTCCTACT CCTGGTAGGCCAGTATTTAGCTTCAGTGTTGGTAATCTTGCAAAAAAGAGCTTTCCATCCAAGTGGGATGATGCAGAGAAGTGGCTGATAAGCAGTTCTT GCCACGAGTCTCCTGCTCATGTCATAAAGCCATCACCAGAGTCTTCAAAGATTCACAAACAATGTGATAATTTTAAGCAGCAAATAGAGGTATTTGCGGA GAAATCAAGGGTTACGGAGGAGAAAGCACCAAAAGTTACTACCAGCTTTCAAGGGTCAGTGGCTTTGGACCAACATAACTCAGCCACAGCTTTTAATGGG ACTTCTGTTTCTGCTGATATGCTTCTAAAAGATAAATTCACAAGCGAGGTGGAGCCGGTTTTACCAAGTTTTATATATTCAGGGCCATCGAAAGAAGGTT TTCTCTTTAGAAACTTAGACAATGAAAGCATGAAAGATGCCGGCACTGAAATAATTCATGAGGTGAAACACAGAGATGTCGGGACAGAGATGACTCCACT AGGCAGTTCCATGAATTCTAGGTGCCACACCCCATTCAAGAGTTCATCGCCTGCTCGTCATAACACACCTGCCAGTAGGTCAGGCCCATTGGCATTAGGG AACTCGGGCAGTGGCAATAATTCTATTGACATTTCACAGCTGCAAGAATGTCATTTGGCTAAGCTACATCTTGGGACGCAATATGGTTCTGTCACATCAA ATTGGAGCTCAAGGGAAGAGGAAGAAGAGGAAATATCTAAGAGCCTGAGACATTTTGAAACAGGCATTGTATCTCAGAAAAGTGTTTCAGACTCAAGAGC TGCTGCATGGGAAGAAGAGGAAAAGACAAAGTGCTGCCTTAGGTATCAGAGAGAGGAGGCGAAAATTCAAGCTTGGGTTAACCTCGAAGGCGCAAAAGCA GAAGCGCAATCAAGAAAGCTCGAGGTGAAAATACAGAAAATGAGATCAAATCTAGAGGAGAAGTTGATGAAGAGGATGGCAGTTGTGCACAGAAAAGCTG AAGAATGGAGAGCAGCAGCTCACCACCGGCACACCGAGCAGACTCAAAGGGCTAGTGTACAAGCACAGAAGATAATCATAGACAGACATAACATGCAATT TTCTGGCCACACTTCTTGTGGTTGCCTTCCTTGCAACAATAATCATTGA
AA sequence Show only first row Show all	>Potri.001G163000.1 pacid=42790602 polypeptide=Potri.001G163000.1.p locus=Potri.001G163000 ID=Potri.001G163000.1.v4.1 annot-version=v4.1 MDLTAPKYFQPPPVFVPNGEPALETKTSTSFYVKVKENPFADSFQDPLCKLNLKETSEFVKSFPMANSSAECRGFLEVSVPRRTEGVNSVTQRRVEAPPT PGRPVFSFSVGNLAKKSFPSKWDDAEKWLISSSCHESPAHVIKPSPESSKIHKQCDNFKQQIEVFAEKSRVTEEKAPKVTTSFQGSVALDQHNSATAFNG TSVSADMLLKDKFTSEVEPVLPSFIYSGPSKEGFLFRNLDNESMKDAGTEIIHEVKHRDVGTEMTPLGSSMNSRCHTPFKSSSPARHNTPASRSGPLALG NSGSGNNSIDISQLQECHLAKLHLGTQYGSVTSNWSSREEEEEEISKSLRHFETGIVSQKSVSDSRAAAWEEEEKTKCCLRYQREEAKIQAWVNLEGAKA EAQSRKLEVKIQKMRSNLEEKLMKRMAVVHRKAEEWRAAAHHRHTEQTQRASVQAQKIIIDRHNMQFSGHTSCGCLPCNNNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	0	1
AT2G25220			Protein kinase superfamily pro...		Potri.001G048500 [exp]	2.23	0.8706
AT3G06130			Heavy metal transport/detoxifi...		Potri.008G202800 [exp]	3.16	0.8551
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	4.47	0.8578
AT2G02170			Remorin family protein (.1.2)		Potri.010G098000 [exp]	8.94	0.8411
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	9.79	0.8537
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054700 [exp]	11.18	0.8320
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	11.87	0.8627	Pt-CALS1.3
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.004G189800 [exp]	15.87	0.7808
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	15.96	0.8134
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	16.24	0.8477

Compare expression of checked genes

Potri.001G163000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.