Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53903 114 / 5e-33 Protein of unknown function (DUF581) (.1) AT1G53885 114 / 5e-33 Protein of unknown function (DUF581) (.1) AT1G78020 64 / 3e-13 Protein of unknown function (DUF581) (.1) AT1G22160 62 / 1e-12 Protein of unknown function (DUF581) (.1) AT2G44670 59 / 6e-12 Protein of unknown function (DUF581) (.1) AT5G49120 60 / 9e-12 Protein of unknown function (DUF581) (.1) AT5G47060 59 / 3e-11 Protein of unknown function (DUF581) (.1) AT5G65040 57 / 3e-11 Protein of unknown function (DUF581) (.1) AT4G39795 57 / 4e-11 Protein of unknown function (DUF581) (.1) AT4G17670 57 / 1e-10 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071900 [exp] 273 / 1e-95 AT1G53903 108 / 4e-31 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 63 / 6e-13 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 63 / 6e-13 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 62 / 1e-12 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 61 / 5e-12 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 60 / 2e-11 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.003G085700 [exp] 57 / 2e-10 AT4G17670 140 / 2e-43 Protein of unknown function (DUF581) (.1) Potri.001G148700 [exp] 56 / 3e-10 AT4G17670 142 / 5e-44 Protein of unknown function (DUF581) (.1) Potri.007G089200 [exp] 56 / 6e-10 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003939 [exp] 71 / 1e-15 AT1G53903 60 / 1e-11 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 61 / 6e-12 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 61 / 7e-12 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 58 / 2e-11 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 56 / 3e-10 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 55 / 1e-09 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 56 / 2e-09 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 53 / 3e-09 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 54 / 8e-09 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 53 / 1e-08 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.001G163400.1 pacid=42789358 polypeptide=Potri.001G163400.1.p locus=Potri.001G163400 ID=Potri.001G163400.1.v4.1 annot-version=v4.1 ATGCTAGCAAAACTCAAGATTGCCTTCAAAATGGAAGGATGTTTCAATGAGGAAGCCATGGCTAAATCCACATGTGCAAGCTCGAGGAAGGGCTTAGTGG TTGCTGGGTTGCAAAGCCTTTTACTAGAAGGAGATTCTAATGTTGTCACAAAATCTGCTCTGAAAACACAGCGTCTTCGAGTCCAGGCTACCACCATTGA ATATTGCTACCTCATATCGTGTAACTTGTGTAACAAGATGTTGAGCCCAGACAAAGATATCTACATGTACAGGGGTGATCAAGGCTTTTGTAGCACAGAG TGCAGAAATAGGCAGATAGTTTTGGATGAAATGAGAGAACTAGAAGCATCCACCAAGGAAAGACTAAAATCTTATAAGCACTGTAGTACTGCTGCCGGCC GGCATGAGACTCGCCGAGTCCTAGAAGACCTCCGCCGGCGTCATAAACCACTTCCTCGTCAAAACCACTGGACAATAGCCTCCTAG
AA sequence Show only first row Show all	>Potri.001G163400.1 pacid=42789358 polypeptide=Potri.001G163400.1.p locus=Potri.001G163400 ID=Potri.001G163400.1.v4.1 annot-version=v4.1 MLAKLKIAFKMEGCFNEEAMAKSTCASSRKGLVVAGLQSLLLEGDSNVVTKSALKTQRLRVQATTIEYCYLISCNLCNKMLSPDKDIYMYRGDQGFCSTE CRNRQIVLDEMRELEASTKERLKSYKHCSTAAGRHETRRVLEDLRRRHKPLPRQNHWTIAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53903			Protein of unknown function (D...		Potri.001G163400 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.005G095250 [exp]	1.41	0.9894
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	2.44	0.9855
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046600 [exp]	3.00	0.9848
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G047000 [exp]	3.16	0.9819	ERF7
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.001G153100 [exp]	4.24	0.9600
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	4.89	0.9841
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.008G166700 [exp]	6.48	0.9817
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Potri.011G131001 [exp]	6.48	0.9810
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102800 [exp]	7.74	0.9583
AT5G37490			ARM repeat superfamily protein...		Potri.015G031000 [exp]	8.48	0.9715

Compare expression of checked genes

Potri.001G163400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.