Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14240 1174 / 0 Subtilase family protein (.1) AT4G34980 805 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 723 / 0 ARA12 Subtilase family protein (.1) AT2G05920 703 / 0 Subtilase family protein (.1) AT5G51750 690 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 674 / 0 Subtilase family protein (.1) AT1G04110 625 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 570 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 561 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 534 / 1e-179 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071800 [exp] 1389 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 846 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 843 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.012G131500 [exp] 724 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 718 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.006G141200 [exp] 706 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 706 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 704 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 699 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013187 [exp] 1164 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 1162 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 725 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 719 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 713 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 712 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 704 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 694 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 651 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10036546 [exp] 650 / 0 AT1G01900 822 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G163600.1 pacid=42791357 polypeptide=Potri.001G163600.1.p locus=Potri.001G163600 ID=Potri.001G163600.1.v4.1 annot-version=v4.1 ATGCTCTCTCTCCTCTCCTTTCTTTCTCTCCTCGCCATTGCAACTTCTTCTTCAACTAATGAGCAACCAAGAACCTTCATTGTCCAAGTCCAGCATGACT CAAAACCCTTAATTTTCCCCACCCACCAGCAATGGTACACTTCCTCTCTCTCCTCCATCTCCCCTGGAACCACTCCCCTTTTACTCCACACTTACGACAC CGTTTTCCATGGCTTCTCTGCCAAACTTTCCCTTACTGAAGCTCTCAAGCTCCAGACTCTCCCTCATATCATTGCTGTCATCCCTGAACGGGTGCGTCAC GTGCACACCACGCGCTCCCCTCAATTCCTCGGCTTGAAAACAACCGACGGAGCTGGTTTGCTCAAAGAGTCGGATTTTGGGTCCGATCTTGTGATCGGAG TTATCGACACGGGTATTTGGCCTGAACGGCAGAGCTTCAATGACCGGGATTTGGGTCCTGTCCCCTCAAGATGGAAAGGGGTTTGTGCTAGTGGCAAAGA CTTCGCTTCAAGTTCTTGTAATAGAAAGTTAATAGGAGCTCGCTACTTCTGCAATGGATACGAGGCAACAAACGGCAAAATGAATGAAACGACCGAGTAC CGGTCGCCACGTGACTCTGATGGCCACGGCACTCACACTGCTTCCATTGCAGCTGGAAGGTACGTGTTTCCGGCATCAACATTTGGGTATGCACGTGGGG TTGCTGCAGGAATGGCACCAAAAGCTAGACTTGCTGCTTATAAGGTTTGTTGGAATGCCGGTTGTTATGATTCTGACATTTTAGCTGCATTTGATGCTGC TGTTTCTGATGGGGTTGATGTTATTTCGTTAAGTGTTGGAGGCGTTGTAGTGCCTTATTATTTAGATGCCATTGCAATAGGGTCTTTTGGAGCAGTGGAT CGTGGGGTTTTTGTATCAGCCAGTGCTGGGAACGGTGGACCTGGAGGTTTAACTGTTACTAATGTAGCTCCATGGGTAACTACTGTTGGTGCTGGGACGA TTGATAGGGATTTTCCGGCTGATGTTAAGCTTGGAAACGGGAAAGTGATTTCTGGTGTAAGTCTTTATGGTGGGCCAGGTCTGGCTCCAGGGAAGATGTA TCCAGTGGTTTATGCTGGGAGTAGTGGAGGTGGAGACGAGTATTCTAGCTCATTGTGTATAGAGGGTTCTTTAGATCCCAAGTTGGTTGAAGGGAAAATT GTGGTGTGTGATAGAGGGATTAATTCAAGGGCTGCTAAAGGTGAGGTTGTGAAGAAATCTGGAGGGGTTGGGATGATTTTGGCAAATGGGGTTTTCGATG GTGAAGGTTTAGTCGCTGATTGTCATGTTTTGCCTGCTACTGCTGTTGGTGCTTCTGGTGGTGATGAAATTAGGAGGTACATGTCGGCGGCTTCTAAATC AAAGTCATCACCACCTACTGCTACTATTGTTTTTAGAGGGACTAGAGTTAATGTTCGGCCAGCGCCAGTGGTGGCCTCATTTTCAGCTAGAGGGCCAAAT CCCGAGTCCCCTGAAATTTTGAAGCCTGATGTTATTGCTCCTGGTTTGAACATACTTGCTGCTTGGCCTGATAAAGTCGGACCCTCTGGGATTCCGTCTG ACCAGCGAAAAATTGAGTTTAACATTCTTTCAGGCACATCAATGGCTTGTCCACATGTTTCCGGATTAGCCGCTTTGTTAAAGGCAGCTCACCCTGAATG GAGTTCGGCAGCAATAAGGTCGGCATTGATGACAACTGCGTATACTGTTGATAATCGAGGCGAAGAAATGATTGACGAGTCCACTGGAAATGTTTCTACT GTGTTAGATTTCGGTGCTGGTCATGTTCACCCGCAAAAGGCCATGAATCCTGGGTTGATCTATGATATTTCATCATTTGATTATATGGATTTCCTTTGTA ATTCAAATTATACACTTACCAACATTCAAGTGGTCACTAGGAGGAATGCAGATTGCAGTGGAGCCAAAAGGGCAGGCCACGCAGGGAACTTGAATTACCC TTCATTAACTGTTGTGTTCCAACAATATGGCAAGCATCAGATGTCCACACATTTTATTAGGACAGTGACTAATGTCGGGGATCCAAATTCCGTGTACAAA GTTACAATTAGGCCACCTAGTGGGACTTCGGTCACCGTACAGCCGGAGAAGCTTGTGTTTAGGAGGGTGGGGCAGAAATTGAACTTCCTTGTTAGAGTGG AAACCACAGCAGTGAAGCTCGCACCTGGGGCCTCGAGCATGAAGAGTGGTTCAATAATCTGGGCAGATGGAAAGCACACTGTCACTAGTCCCGTAGTTGT GACCATGCAGCAACCTCTTTAA
AA sequence Show only first row Show all	>Potri.001G163600.1 pacid=42791357 polypeptide=Potri.001G163600.1.p locus=Potri.001G163600 ID=Potri.001G163600.1.v4.1 annot-version=v4.1 MLSLLSFLSLLAIATSSSTNEQPRTFIVQVQHDSKPLIFPTHQQWYTSSLSSISPGTTPLLLHTYDTVFHGFSAKLSLTEALKLQTLPHIIAVIPERVRH VHTTRSPQFLGLKTTDGAGLLKESDFGSDLVIGVIDTGIWPERQSFNDRDLGPVPSRWKGVCASGKDFASSSCNRKLIGARYFCNGYEATNGKMNETTEY RSPRDSDGHGTHTASIAAGRYVFPASTFGYARGVAAGMAPKARLAAYKVCWNAGCYDSDILAAFDAAVSDGVDVISLSVGGVVVPYYLDAIAIGSFGAVD RGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVKLGNGKVISGVSLYGGPGLAPGKMYPVVYAGSSGGGDEYSSSLCIEGSLDPKLVEGKI VVCDRGINSRAAKGEVVKKSGGVGMILANGVFDGEGLVADCHVLPATAVGASGGDEIRRYMSAASKSKSSPPTATIVFRGTRVNVRPAPVVASFSARGPN PESPEILKPDVIAPGLNILAAWPDKVGPSGIPSDQRKIEFNILSGTSMACPHVSGLAALLKAAHPEWSSAAIRSALMTTAYTVDNRGEEMIDESTGNVST VLDFGAGHVHPQKAMNPGLIYDISSFDYMDFLCNSNYTLTNIQVVTRRNADCSGAKRAGHAGNLNYPSLTVVFQQYGKHQMSTHFIRTVTNVGDPNSVYK VTIRPPSGTSVTVQPEKLVFRRVGQKLNFLVRVETTAVKLAPGASSMKSGSIIWADGKHTVTSPVVVTMQQPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	0	1
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.003G126500 [exp]	1.00	0.7863
AT1G55360			Protein of Unknown Function (D...		Potri.001G003800 [exp]	2.00	0.7851
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.003G137800 [exp]	3.31	0.7507
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.009G086700 [exp]	4.24	0.7702
AT4G39790			Protein of unknown function (D...		Potri.005G077700 [exp]	5.29	0.7493
AT5G57100			Nucleotide/sugar transporter f...		Potri.006G072500 [exp]	5.47	0.7545
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.007G007400 [exp]	8.00	0.7792
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	8.48	0.7799
AT3G26700			Protein kinase superfamily pro...		Potri.002G237600 [exp]	9.89	0.6976
AT3G13000			Protein of unknown function, D...		Potri.007G003900 [exp]	10.48	0.7750

Compare expression of checked genes

Potri.001G163600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.