Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72440 971 / 0 SWA2, EDA25 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G151650 [exp] 41 / 0.0006 ND / Potri.004G152201 [exp] 41 / 0.0008 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013182 [exp] 1056 / 0 AT1G72440 1011 / 0.0 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1) Lus10037444 [exp] 1047 / 0 AT1G72440 1012 / 0.0 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03914 [poplar] [flax] CBF CBF/Mak21 family
Representative CDS sequence Show only first row Show all	>Potri.001G164100.1 pacid=42792671 polypeptide=Potri.001G164100.1.p locus=Potri.001G164100 ID=Potri.001G164100.1.v4.1 annot-version=v4.1 ATGGTGACAGAAAAAAGCACGAAGCCCTCAAAGGACAACATAGAGGCGTTGAAATCAGAGGTAGCCTCTTTTGCTTCCTCTTTAGGCCTCGCCTCTTCCA CTTCCTCCTACACTGGTTTCAACGATACAGATTTTCGAAACCCTAAACCAAAACCAAAACCTAAACCAAAACCAAAACAAAATCAAAACGAAGACAAACC ACCTCCTCCTTCTCAAAAACCCCATCTTGATAAAAAAACCTCAAATAAGCCTCCAACTTTTAGAAACAAAAATGACAAATCACAAAAACCCATTTCAAAA CCAACACCAAAGCCTCCAATTTTGTCGCTTGATGCCGGTGATGATGACAAGAACAGTAATATTACAAGAAAATTTGACAAGTACAAGAACCTCCCTAAGT TGCCTTTAGTGAAGGCAGGTGCAGTGGGTGTGTGGCATGTGGACTTAATGGAATTGGAGAACAAAGTTTTGGGTGAAGAAAGCAAAGGAAAGTTGGAAGT TAAAATGGGTGTTGGGGAATGGAAAAGCTTTGTGGAGAAGAAGAGAGAGTTAGGGGAGAGATTGATGTGGCAGTATGGAAAGGATTATGAACAGGGTAGA GGTCAAAAGGGGGATATTAAGATGTTGCTAGCTACACAGAGGTCTGGGACTAATGCTGATAAAGTGTCTGCCTTTTCTGTGCTTATTGGTGACAATCCTG TTGGAAATTTGAGGTCACTTGATGCACTTTTAGGAATGGTAACATCCAAAGTGGGGAAGCGGCATGCTCTAACAGGATTTGAAGCATTGAAAGAGCTTTT TATTTCAACTTTGCTACCTGATCGTAAGCTGAAGACCCTTTTACAGAGGCCTCTAAATAATGTTCCTGAGACAAAAGATGGTTATTCTCTTCTTCTTTTA TGGTATTGGGAGGACTGTTTAAAGCAGAGGTACGAACGTTTTGTTTTTGCACTTGAGGAAGCATCAAGAGATATGCTACCTGCACTAAAAGACAAGGCAT TGAAGATAATGTATGCATTGTTGAAGAGCAAATCAGAGCAGGAGCGCAGATTGCTTTCTGCATTAGTTAACAAACTAGGTGATCCCCAAAATAAAAGTGC ATCCAATGCTGACTTTCACTTATCCAACCTTTTGTCTGACCACCCAAACATGAAGGCTGTGGTGATTGATGAAGTGGACTCTTTTCTTTTTCGACCTCAT TTGGGATTACGATCAAAGTACCATGCTGTTAATTTTCTGAGTCAAATTCGTCTTGGTCATAGAGGCGATGGACCAAAAGTGGCAAAACATCTGATAGATG TATACTTTGCACTGTTCAAGGTGTTGATAACTGAGGCAGGCAGCAGCAAAAAGATGGATAAAAGCAGCAAGGCAGAGAGAAATACTTCTGGTTCTTCTAA AGAGAACGAGATAAAAAGTTCACCAGAATCCCACATTGAATTGGATTCACGACTTCTATCAGCTCTTTTAACAGGTGTTAATAGAGCATTTCCTTATGTT TCAAGTGCTGAGGCGGATGACATTATTGAGGTCCAAACACCAACGCTCTTCCAACTGGTTCACTCCAAGAATTTCAATGTGGGGATTCAGGCACTGATGC TTCTTGATAAAATCTCATTGAAGAATCAGATTGTCAGTGACCGGTTTTACCGTTCTTTGTACTCCAAACTCTTACTTCCAGCTGTCATGAATTCATCCAA GGCAGAAATGTTTATTGGACTCCTTCTGAGAGCCATGAAAAGTGATATAAATCTGAAGCGGGTTGCTGCCTTTTCAAAGCGACTATTGCAGGTTGCCCTT CAGCAGCCACCTCAGTATTCCTGTGGATGCCTTTTTCTCCTCTCGGAAGTTCTCAAAGCACGGCCACCTTTATGGAACATGGTGCTCCAAAGTGAGTCAG TTGATGAAGATCTTGAACATTTTGAAGACATAATGGAAGAAACTGATAATGAACCTTCCACAACACCCAAAAAAGAAGAGATCGAAGTTGATTTAGTTGA AAATGGTGATAAGATCGACTCTGAAAGTGATTCTGCAGAAGATGAAGATGATTCTCCCGCTACTAGCTCCGAGGATGATGTTTCAGATGAAGAGGAGTTG CTAATGGAAGACAGTTCAAAAGAACTTCAAGAATCACAACCACAATCTGATCATAATGGTAACCAGCCACAAATAAATTCTTCAGGGTCTTCCCTGCCTG CAGGATATGATCCACGTCACAGGGAACCTTGTTACTGCAATGCAGATCGTGCTAGCTGGTGGGAGCTGATGGTACTTGCTTCACATGCGCATCCATCTGT TGCTACCATGGCTGGGACACTTCTATCTGGTGCTAATATTGTTTACAATGGAAATCCACTGAATGATCTATCACTTACTGCTTTCCTAGACAAGTTTATG GAGAAGAAACCCAAGCAGACTGCATGGCATGGTGGCTCCCAAATTGAACCAGCCAAGAAGCTTGACATGAACATGCATTTGATCGGGCCTGAAATTCTTT CATTGGCTGAAGTAGATGTACCTCCAGAAGATCTTGTCTTTCACAAGTTTTATGTGAATAAAATGAATACCTCAAAACCAAAGAAAAAGAAAAAGAAGAA GGCAGCTGAAGAGGAAGCTGCTGAAGACTTGTTTGATGTGGGTGATGGTGATGATGATGACGGCGATGACGATGTGGTTGGTGATGATGAGAGTGACAAT GAAGAGATCGATGATCTATTAGACTCTACCAATCTTAGTCACGGAGCGGAAAATGAATATGACTACGATGACTTGGACCAAGTTGTTAACGAAGATGACG ACGACTTAGTCGATGATGCAGAGGTGGATGCCCTAACAGATACTGAGGGAGAAGATTTTGACACCATTGTTGACAGTGACAATGATGCTGTTGATGTCGG GGATGCAGATGATGGTACTGATGAGGATGGGCTTGACCAACGGAAAAGAAAGCGGAAGTCTAGAGGGAAGGCAGGTGCGTCCCCATTTGCAAGTCTTGAG GAATACGAGCATGTATTAAACGAAGATAATGCAACAAAAAAGAAGTCAGAAAGAAAGAAAAAGTCTAAATCACTGAAGAAGAGAAAATCATCTAAATAG
AA sequence Show only first row Show all	>Potri.001G164100.1 pacid=42792671 polypeptide=Potri.001G164100.1.p locus=Potri.001G164100 ID=Potri.001G164100.1.v4.1 annot-version=v4.1 MVTEKSTKPSKDNIEALKSEVASFASSLGLASSTSSYTGFNDTDFRNPKPKPKPKPKPKQNQNEDKPPPPSQKPHLDKKTSNKPPTFRNKNDKSQKPISK PTPKPPILSLDAGDDDKNSNITRKFDKYKNLPKLPLVKAGAVGVWHVDLMELENKVLGEESKGKLEVKMGVGEWKSFVEKKRELGERLMWQYGKDYEQGR GQKGDIKMLLATQRSGTNADKVSAFSVLIGDNPVGNLRSLDALLGMVTSKVGKRHALTGFEALKELFISTLLPDRKLKTLLQRPLNNVPETKDGYSLLLL WYWEDCLKQRYERFVFALEEASRDMLPALKDKALKIMYALLKSKSEQERRLLSALVNKLGDPQNKSASNADFHLSNLLSDHPNMKAVVIDEVDSFLFRPH LGLRSKYHAVNFLSQIRLGHRGDGPKVAKHLIDVYFALFKVLITEAGSSKKMDKSSKAERNTSGSSKENEIKSSPESHIELDSRLLSALLTGVNRAFPYV SSAEADDIIEVQTPTLFQLVHSKNFNVGIQALMLLDKISLKNQIVSDRFYRSLYSKLLLPAVMNSSKAEMFIGLLLRAMKSDINLKRVAAFSKRLLQVAL QQPPQYSCGCLFLLSEVLKARPPLWNMVLQSESVDEDLEHFEDIMEETDNEPSTTPKKEEIEVDLVENGDKIDSESDSAEDEDDSPATSSEDDVSDEEEL LMEDSSKELQESQPQSDHNGNQPQINSSGSSLPAGYDPRHREPCYCNADRASWWELMVLASHAHPSVATMAGTLLSGANIVYNGNPLNDLSLTAFLDKFM EKKPKQTAWHGGSQIEPAKKLDMNMHLIGPEILSLAEVDVPPEDLVFHKFYVNKMNTSKPKKKKKKKAAEEEAAEDLFDVGDGDDDDGDDDVVGDDESDN EEIDDLLDSTNLSHGAENEYDYDDLDQVVNEDDDDLVDDAEVDALTDTEGEDFDTIVDSDNDAVDVGDADDGTDEDGLDQRKRKRKSRGKAGASPFASLE EYEHVLNEDNATKKKSERKKKSKSLKKRKSSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	0	1
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	1.41	0.8611
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	3.16	0.8306
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	3.46	0.8529
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	4.47	0.8322
AT4G20020			unknown protein		Potri.004G218650 [exp]	4.58	0.8449
AT3G55160			unknown protein		Potri.004G128601 [exp]	4.69	0.7995
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	5.29	0.8190
AT1G27090			glycine-rich protein (.1)		Potri.008G194200 [exp]	6.92	0.7686
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Potri.013G151600 [exp]	8.36	0.8059	CDC48.4
AT3G56990		EDA7	embryo sac development arrest ...		Potri.016G037400 [exp]	8.48	0.7773

Compare expression of checked genes

Potri.001G164100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.