Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72390 778 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G069200 [exp] 1464 / 0 AT1G72390 739 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008132 [exp] 944 / 0 AT1G72390 867 / 0.0 unknown protein Lus10013169 [exp] 937 / 0 AT1G72390 746 / 0.0 unknown protein Lus10013170 [exp] 59 / 2e-10 AT1G72390 74 / 3e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G165800.1 pacid=42792320 polypeptide=Potri.001G165800.1.p locus=Potri.001G165800 ID=Potri.001G165800.1.v4.1 annot-version=v4.1 ATGGGGGTCTCTTTTAAGGTCTCAAAAACTGGTACTAGGTTCCGTCCAAAGCCTGTTTTTCAATCAGATACTGTTCCTGATGAAGTCTCAGAGAATTTCA AAGAGAGCTCGGTGATTGGCTCAAAGAATGAATCCTCTACGAGAAAGCGCCAGGGTGACATTGTTGCGGGTGCTTTGGATGTGTTAGATGTCTCAAGTTC ATCTCTCTCTGAGCATGAAGTTTCATTCACATTGAACCTCTATCCAGATGGATATTCTATAGCAAAACCCCCAGAGATTAAGGCTGCACATCAGGCTCCA CTTCAAGATGGTCAGAAGTTGTTGCATCCATATGATAAGGCTTCTGAAACACTCTTTTCGGCAATTGAATCTGGCCGGTTACCTGGAGATATTCTGGATG ATATTCCATGTAAATATGTTAATGGAACACTTGTGTGTGAGGTGCAAGATTATCGGAAATGTGCTTCCAAGCAGGGGTCTAGCATTCCATCTATGGATGG GCTCCCTATTGTCAATAAAGTACGCCTTACGATGTCATTGGAGAATGTAGTGAAGGATATCCCGATGATCTCTGATAATTCTTGGACGTATGGTGATTTG ATGGAAGTAGAATCCCGCATATTGAAAGCATTGCAACCACAGCTTTGTCTAGATCCTACTCCCAAATTGGATAGGCTCTGTAATAACCCAATTTCGACCA AGCTCAATTTAGATCTGAGCAGTTTCCACAGAAAAAGATTAAGGCAGACACCTGAGGTTACTGTCACATCTAATAACAGAATCCATGGAAAGAACGTTTT CATCAATCGTGTGTCTGAAAGCTCTAACAGTAGGTTTGGAGATTCTGGAATCATTTCAGGAAATGTGATACCACAGCATGTCCAGGAGAACCAGTCTACT CAAAACCTTGGCCCTAACAACATGTTAACCTTAAGAGCAAGAAGCTTTGTTCCGGATGGCAATGTTCCTGGACTAACTTTGGTACCCCAGCAGCAGAGGT ATCAAATTGGGATTTCCCCAAGAAGTATGCAGGATCAAGGGTCGTCTCTCATTAATGTTTCAGGAGCTTCCCCTTCCAGGCAGGACATGATTGTTGCTTA CACCAACATCATTAATCCTGGTGGTTCTCTTCATGGGAAAAGGGAGAACCAAGATGCCCAATCATCGCCTTTATCTAGTTTTAATAAGAGAGCAAGGCTT ACACCAGCAGGTCCTGATGGAATTCAACAGCAGCAAATGGGGCTGCATATGGACAGCCTCCATGAATCCGAAATGAACTGGAAGAATTCATTACTACAGC AGCAAGCAATGACAAGAGGAATTCAGTATGCTAATTCAGGCATTCAGAAGTATCCTCACCAGATGTTAGAAGGGGTTGTGCATCCAAATGCTGCAGCAAC ATCATTTTCTGCAGGACAGCCAGGTATGAGACTTGGTCTCAAGGAAGAACAGTTAGAGACAGAAAAACCGGATGTGCTTGGTCAGGGTAAAAATGATAGG CAGATGATGGAAGCAGAAGCAGGCCATTTGGACACACAGCAACTACAGGTACAACAAAGATTACCACAACATCTCATGAGATCTAATTTCCCTCAGGGTG GATGGAACAATCTCAGTCAAGATTGTAGGAAGGAGGAACCACACCAAAAGAGGAAATTGGCTCAAAGTCCCCGGTTATCAACTGGGTTAGCTCATTCGCC TCTATCATCAAAATCTGGTGAATTGTCCAGTGGTTCAGCTGGACCCCATTTTGGAGCAACTGTTGCACTTGGGTCATCACAAAGGGAGAAGTCAATGGCT ACTGCCCCATCTTTGACTTCCAGTGCTAATGATCCCTTGCAAAGGCAGCACCAGGCTCAGGTTGCTGCAAAACGGAGATCGAATTCCCTTCCCAAGACCC CAATAATGAGCAATGTGGGGTCTCCTGCAAGTGTTAGCAATATAAGTGTTCCATTAAATGCAAATAGTCCTTCAATTGGGACCCCACCAATGGCTGATCA AAGCATGCTTGAAAGATTTGCGAAGATTGAGATAGTGACAATGAGGCATCAACTCAACTGCAAAAAGAATAAAGTTGATGATTACTCTATCACAAAACCA AACACCTATTCACTTCAAAATCTGTCTGAACATCTCTCCAATTCAGCTAATAATGAGGAGTTCAAAGATGATAGTAATGCAAGGCAGTTATCAAAGTCTC TTGCAGGTGGCAATATGAATATCTGCAAGACGAGATTTATGGATTTCGTGCTGCCAGAACGAGTGCTTCAAGGGAATGCTATTTCTTATGTTACAAAAGT ACGGAATAGAATGATTATGTCAGAGAAGCCAAATGATGGTACTGTGGTGATGCATTATGGAGAAGCAGATGAGAAGCCAGTTGATGTTCTATCTGCAGAA GATTATCTTCCCACGTTGCCCAATACTCATTTTGCGGATTTGCTTGCAACACAATTTTGTTCACTGATGACGCGGGAAGGATATCTTGTGGAATATCATA TTCAACCGAGACCTGTCTGTATTAATATTGCTTCAAGCAGTCAACCAAATGTTTCTGGAGGCCCTCTTAATAATTCTGCTATTGAGGTGAAGCAATACAA TGAAGCAGTTTCAGTTCAGTCATTGAATGATATAAAACCTACTCTTGGTGGCAATGCGTCTATTAATTCGTCTCACAATCTACTAGCAAATTCAAGGATG CTGCCTCCTGGAAATCCTCAGGCCTTACAGATCTCCCAAAGTCTTGTGTCTGGGGTTTCAATGCCTGCAAGACTACAACAACTAGATCCACAGCATTCTC TTCTGCAGCAGCATCAACAGCATCAACAGCAGCAACAGCAACAGCAACAGCAGCTGCAGCAACAAAATCAACATGCCTTAATTCAACAGCAAAATTCACA GTTTCAGAGGTCACCAATGGTGCTTCCATCAAATCCACTCTCTGATTTAGGTGCAATTGGAGCAAATTCAAATATGCAGTTGGGTAGTCACATGGTAAAC AAGCCTTCTACTCTTCAGCTGCAGCAGCAGCTGCTGCAGCAGCAGCAGCAACTGCAGCAGCTGCAGCAGGGGCAGCAGCAGCAGGGGCAGCAGCAGTCGC AGCAGCCGTTGCAGCAGCAGCAGGGGCCACAGATGCAGCAGAGGAAAATGATGATGGCTATGGGTATGGGAAGCATGGGGAATAACATGGTTGGTCTAGG AGGTCTGGGTAATGCCATGAGCATTGGAGGTGCGAGGGGAATAGGCCCTGGAATCTCTGGACCTATGGCTCCTATAACTGGAATGAGTAATGCCAGCCAG AACCCGATAAATCTGGGCCATACTCAAAATATCAATGCATTAAATCAGCAACTTCGTACTGGACACATGATGCCTGCAGCTGCTCAGATGGTGAAACAAA GAATCAATCGAGCGAGTGTGCTAGGGGGGGCTCAGTCTGGCATAGCTGGGATGTCAGGAGCCAGGCAGATGCACCCAGGCTCTGCTGGTTTTTCCATGCT TGGCCAACCTCTGAACCGAACCAACATGAATGTAATACAACGAAGTCCAATGGGGCATATGGGTCCACCAAAGATGATGGCAGGGATGAATCACTATATG CAGCAGCAGCAATTACAGCAGCAGCAACAACAATTACAGCAGCAGCAGCAGCCACAATTACAACAACTGCAACAACAATTACAGCCACAGCAACATCAAC AGCTGCTACTGCAGCAGCAGCAAGAAACTTCATCGCTACAGGCTGTTGTTGCTCCTTCACAAGTGGGGTCACCGTCAACCATGGGAATTCCACTACTGAA CCAACAAACCCAGCAGCAGCCCAGCCCACAGCAAATGAGCCAGCGAACCCCAATGAGCCCACAGTTGAGTTCAGGAGCAATCCATGCCATCAGTTCTGGT AATCCAGAGGCTGGTCCCGCCAGTCCACAGTTGAGCTCTCAAACCCTTGGTTCTGTTGGAAGCATCACAAATTCTCCAATGGAACTCCAAGCTGTGAACA AACGCAACTCTGTTAGCAATGCATGA
AA sequence Show only first row Show all	>Potri.001G165800.1 pacid=42792320 polypeptide=Potri.001G165800.1.p locus=Potri.001G165800 ID=Potri.001G165800.1.v4.1 annot-version=v4.1 MGVSFKVSKTGTRFRPKPVFQSDTVPDEVSENFKESSVIGSKNESSTRKRQGDIVAGALDVLDVSSSSLSEHEVSFTLNLYPDGYSIAKPPEIKAAHQAP LQDGQKLLHPYDKASETLFSAIESGRLPGDILDDIPCKYVNGTLVCEVQDYRKCASKQGSSIPSMDGLPIVNKVRLTMSLENVVKDIPMISDNSWTYGDL MEVESRILKALQPQLCLDPTPKLDRLCNNPISTKLNLDLSSFHRKRLRQTPEVTVTSNNRIHGKNVFINRVSESSNSRFGDSGIISGNVIPQHVQENQST QNLGPNNMLTLRARSFVPDGNVPGLTLVPQQQRYQIGISPRSMQDQGSSLINVSGASPSRQDMIVAYTNIINPGGSLHGKRENQDAQSSPLSSFNKRARL TPAGPDGIQQQQMGLHMDSLHESEMNWKNSLLQQQAMTRGIQYANSGIQKYPHQMLEGVVHPNAAATSFSAGQPGMRLGLKEEQLETEKPDVLGQGKNDR QMMEAEAGHLDTQQLQVQQRLPQHLMRSNFPQGGWNNLSQDCRKEEPHQKRKLAQSPRLSTGLAHSPLSSKSGELSSGSAGPHFGATVALGSSQREKSMA TAPSLTSSANDPLQRQHQAQVAAKRRSNSLPKTPIMSNVGSPASVSNISVPLNANSPSIGTPPMADQSMLERFAKIEIVTMRHQLNCKKNKVDDYSITKP NTYSLQNLSEHLSNSANNEEFKDDSNARQLSKSLAGGNMNICKTRFMDFVLPERVLQGNAISYVTKVRNRMIMSEKPNDGTVVMHYGEADEKPVDVLSAE DYLPTLPNTHFADLLATQFCSLMTREGYLVEYHIQPRPVCINIASSSQPNVSGGPLNNSAIEVKQYNEAVSVQSLNDIKPTLGGNASINSSHNLLANSRM LPPGNPQALQISQSLVSGVSMPARLQQLDPQHSLLQQHQQHQQQQQQQQQQLQQQNQHALIQQQNSQFQRSPMVLPSNPLSDLGAIGANSNMQLGSHMVN KPSTLQLQQQLLQQQQQLQQLQQGQQQQGQQQSQQPLQQQQGPQMQQRKMMMAMGMGSMGNNMVGLGGLGNAMSIGGARGIGPGISGPMAPITGMSNASQ NPINLGHTQNINALNQQLRTGHMMPAAAQMVKQRINRASVLGGAQSGIAGMSGARQMHPGSAGFSMLGQPLNRTNMNVIQRSPMGHMGPPKMMAGMNHYM QQQQLQQQQQQLQQQQQPQLQQLQQQLQPQQHQQLLLQQQQETSSLQAVVAPSQVGSPSTMGIPLLNQQTQQQPSPQQMSQRTPMSPQLSSGAIHAISSG NPEAGPASPQLSSQTLGSVGSITNSPMELQAVNKRNSVSNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72390			unknown protein		Potri.001G165800 [exp]	0	1
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	2.00	0.9138
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	3.16	0.9062
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	4.00	0.9089
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	4.24	0.9060
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	5.19	0.9137
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	5.83	0.8939
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	6.92	0.9040
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	7.34	0.8932
AT1G15780			unknown protein		Potri.003G012400 [exp]	7.48	0.9047
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	7.74	0.8979

Compare expression of checked genes

Potri.001G165800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.