Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14120 1571 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037684 [exp] 1679 / 0 AT3G14120 1545 / 0.0 unknown protein Lus10015675 [exp] 1655 / 0 AT3G14120 1529 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04121 [poplar] [flax] Nup84_Nup100 Nuclear pore protein 84 / 107
Representative CDS sequence Show only first row Show all	>Potri.001G165900.1 pacid=42791930 polypeptide=Potri.001G165900.1.p locus=Potri.001G165900 ID=Potri.001G165900.1.v4.1 annot-version=v4.1 ATGGAGGATGTTGAAATGGATGTGTCCAACAGCTACTTCGACCCCGAAGATCTTACCATAAGAGAACAGTTTCGCCGTTACGGGAAAAGGCACTCGATAT CAAGCGTTTCACCCCATCAAGATGGTCCCGTTTCCAAGTTCAGTGAGTCCAGGCTGTTGTATGATGGGAATAATATTCACAGCCCCACCAATGCTGCACT TATTCTAGAAAACATCAAGCAAGAGGTTGACAGCATTGAGACCTATCATTTTGAAGGTGCTACTACGCCTGCGAGGAATCAATCTGCAATCAAAAGGAGA TCGTCTGTTGATAGCCGTGGTGGATTTTCAGAGGCTGATCTTGGTATTGATTCAGGTGCTCGATTTGGAAGCCAATCACTTAAAGCTTGCAAGATTGAGG ATGAGACATTGACGGATAGTGGAGAGACTACTTTTGGTTTATTTGCGTCTCTTTTTGATTCTGCTATTCAAGGGTTGATGCCAATTCGTGATCTCATTTT AAGATTTGAAAAATCATGCCGGGATGTTTCAGAGTCCATTAGGTATGGGCCCAATATATGGCATCGGGTTGTAGAGGACAAATTGATGAGACAGAAGGCT CAGTTCTTGCTTGACGAGGCTGCTACCTGGTCTCTCCTTTGGTACCTCTATGGGAAAGTTACAGAGGAGCCCCCTGAAGAGCTGATTGTGTCACCATCAA CATCACATTTGGAGGCTTGCCAGTTTGTCGTGAATGACCATACAGCACAGTTGTGCCTCCGAATCCTTCAATGGCTGGAAGGGTTAGCCTCTAAAGCCCT TGATTTGGAAAGCAAGGTGCAAGGATCTCATGTTGGTACCTATCTTCCAAAGTCAGGAATTTGGCACCAGACACAACGGTTTCTACAGAAAGGTGCCTCC AATACAAATACTGTTCAACACTTGGATTTTGATGCTCCAACCCGAGAACATGCGCATCAGTTACTGGATGACAAAAAACAAGATGAATCTCTTCTGGAGG ATATCTGGACCCTATTGAGGGCTGGAAGACTGGAAAACGCACTAGACCTTTGCCGCTCAGCTGGACAGCCATGGAGAGCTGCAACTTTATGTCCATTTGG AGGATTGGACCTTGTTCCTTCTGTTGAAGCCCTGGTGAAAAATGGGAAGAACAGAATGCTGCAAGCCATTGAATTAGAAAGTGGCATTGGTCACCAATGG CATTTATGGAAATGGGCTTCCTATTGTGCGTCAGAGAAAATTGCTGAGCAAAATGGTGGGAAATATGAAGTAGCTGTATATGCAGCACAATGCAGCAACT TGAAGCGGATACTTCCAATCTGTACAAACTGGGAGTCAGCATGCTGGGCAATGTCAAAGTCCTGGCTTGATGCTCGGGTGGACTTAGAACTAGCTCGCTC ACAACCAGGAAGAACGGTGCAGCTTAAAAGCTATGGAGATGTTGGTGATGGAAGTCCTGGACAAATTGATGGTGCTGCTCATGCAGCTGGACCAGAAAAT TGGCCACAACAAGTTCTGAACCAGCAACCACGGAACCTTTCAGCACTTCTTCAGAAACTCCACTCAGGTGAACTGGTTAATGAAGCGGTTAGTCGAGGAT GCAAGGAGCAGCACCGGCAAATTGAGATGGATTTAATGTTAGGGAATATACCACATCTTCTAGACATGATCTGGTCATGGATAGCACCTTCGGAGGATGA TCAAAATATCTTCAGGCCACATGGCGATTCTCAGATGATTCGTTTTGGTGCTCACCTAGTGCTTGTGCTGAGGTATTTACATGCTGAGGAAATGCAGGAT TCTTTTAGAGAGAAGCTCATGACTGTTGGTGATCTCATTCTTCATATGTATGTGATGTTTCTGTTCTCAAAGCAACATGAGGAGTTGGTTGGGATCTACG CTTCTCAGCTTGCACGTCACCGTTGCATTGACCTCTTTGTGCATATGATGGAGCTGAGGCTAAATAGCAGTGTGCATGTCAAATATAAAATTTTCCTTTC TGCTATGGAATATTTGCCATTTTCTTCTGAGGATGATTCAAAAGGAAGTTTTGAAGAAATTATTGAGAGGATTCTGTTAAGATCTCGGGAAGTTAAAGGT GGAAAATATGACAAGTCATCAGATGTTGCAGAGCAGCACCGGTTGCAGAGTCTTGAAAAAGCTACATCAATCCAATGGCTCTGCTTTACACCACCCTCCA CAATTACCAATGTGAAAGAAGTCAGCGTGAAACTTCTTCTGCGGGCATTGACACACAGCAATATATTGTTCAGGGAATTTGCTCTGATTTCTATGTGGAG AGTGCCAGCAATGCCAATAGGTGCACATGCATTGCTAAGTTTACTTGCTGAGCCTTTGAAGCAGCTTTCAGAACTACCAAATAGTCTTGAGGATTATGTT TCTGAGAATCTGAAAGAGTTTCAAGATTGGAGTGAGTACTACTCCTCTGATGCAACTTATCGCAACTGGCTCAAAATTGAGATTGAGAATGGTGAGGTTC CTCCCCTTGAACTCTCAGTGGAGGATAAACAAAGAGCCACAGCAGCAGCCAAAGAGACATTGAATTCTTCTATGTCATTGTTATTAAGAAAAGGAAATCC TTGGTTGGCTTCTCCTGATGATGAGACATTTGAATCAACAATGCTTGTATTCCTTGAATTGCATGCCACTGCTATGCTTTGTCTGCCATCTGGTGAATGT ATGCATCCAGACGCTACCATTTGCACTGCATTAATGAGTGCCCTTTACAGTTCAGTGTGTGAGGAAGTTGTATTACGCCGCCAATTAATGGTGAATGTTA CCATTTCACCTAGGGACAATTATTGCATCGAGATTGTTCTTCGCTGTTTGGCAGTAGAGGGTGATGGACTTGGATCACACCAAGTTAGTGATGGTGGTGT TCTGGGTACTGTCATGGCAGCTGGCTTCAAAGGTGAGCTTGCTCGGTTCCAAGCTGGGGTCACAATGGAGATATCCAGATTAGATGCTTGGTATACAAGT GCAGATGGTACTTTGGAAGGCCCAGCAACATATATTGTGCGGGGCCTTTGTCGTAGGTGCTGTCTTCCAGAAATCATTCTTCGATGTATGCAGGTTTCTG TTTCACTAATGGAGTCGGGTAATCCGCCGGAATGCCACGATGAGTTGATGGAACTCGTTGCTTGCCCAGATACTGGGTTTCTTCAATTGTTTAGTCAGCA ACAATTGCAGGAGTTTCTATTATTTGAGAGGGAATATGAAATATGCAATATGGAGCTTCAGGAGGAACTTGCATCTTGA
AA sequence Show only first row Show all	>Potri.001G165900.1 pacid=42791930 polypeptide=Potri.001G165900.1.p locus=Potri.001G165900 ID=Potri.001G165900.1.v4.1 annot-version=v4.1 MEDVEMDVSNSYFDPEDLTIREQFRRYGKRHSISSVSPHQDGPVSKFSESRLLYDGNNIHSPTNAALILENIKQEVDSIETYHFEGATTPARNQSAIKRR SSVDSRGGFSEADLGIDSGARFGSQSLKACKIEDETLTDSGETTFGLFASLFDSAIQGLMPIRDLILRFEKSCRDVSESIRYGPNIWHRVVEDKLMRQKA QFLLDEAATWSLLWYLYGKVTEEPPEELIVSPSTSHLEACQFVVNDHTAQLCLRILQWLEGLASKALDLESKVQGSHVGTYLPKSGIWHQTQRFLQKGAS NTNTVQHLDFDAPTREHAHQLLDDKKQDESLLEDIWTLLRAGRLENALDLCRSAGQPWRAATLCPFGGLDLVPSVEALVKNGKNRMLQAIELESGIGHQW HLWKWASYCASEKIAEQNGGKYEVAVYAAQCSNLKRILPICTNWESACWAMSKSWLDARVDLELARSQPGRTVQLKSYGDVGDGSPGQIDGAAHAAGPEN WPQQVLNQQPRNLSALLQKLHSGELVNEAVSRGCKEQHRQIEMDLMLGNIPHLLDMIWSWIAPSEDDQNIFRPHGDSQMIRFGAHLVLVLRYLHAEEMQD SFREKLMTVGDLILHMYVMFLFSKQHEELVGIYASQLARHRCIDLFVHMMELRLNSSVHVKYKIFLSAMEYLPFSSEDDSKGSFEEIIERILLRSREVKG GKYDKSSDVAEQHRLQSLEKATSIQWLCFTPPSTITNVKEVSVKLLLRALTHSNILFREFALISMWRVPAMPIGAHALLSLLAEPLKQLSELPNSLEDYV SENLKEFQDWSEYYSSDATYRNWLKIEIENGEVPPLELSVEDKQRATAAAKETLNSSMSLLLRKGNPWLASPDDETFESTMLVFLELHATAMLCLPSGEC MHPDATICTALMSALYSSVCEEVVLRRQLMVNVTISPRDNYCIEIVLRCLAVEGDGLGSHQVSDGGVLGTVMAAGFKGELARFQAGVTMEISRLDAWYTS ADGTLEGPATYIVRGLCRRCCLPEIILRCMQVSVSLMESGNPPECHDELMELVACPDTGFLQLFSQQQLQEFLLFEREYEICNMELQEELAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14120			unknown protein		Potri.001G165900 [exp]	0	1
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	1.73	0.8194
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	5.09	0.8099
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G034200 [exp]	6.32	0.7062
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	6.92	0.7999
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	9.16	0.7436
					Potri.002G067900 [exp]	9.38	0.7688
AT1G73180			Eukaryotic translation initiat...		Potri.013G126300 [exp]	10.00	0.7287
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.013G002800 [exp]	12.24	0.7746
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184801 [exp]	13.41	0.7034
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	15.62	0.7772

Compare expression of checked genes

Potri.001G165900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.