Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14110 371 / 3e-129 FLU FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G16760 42 / 0.0004 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013168 [exp] 360 / 6e-125 AT3G14110 325 / 9e-113 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10008131 [exp] 353 / 3e-122 AT3G14110 333 / 8e-116 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10015677 [exp] 339 / 7e-117 AT3G14110 312 / 8e-108 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10037686 [exp] 324 / 4e-111 AT3G14110 304 / 2e-104 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.001G166000.1 pacid=42791902 polypeptide=Potri.001G166000.1.p locus=Potri.001G166000 ID=Potri.001G166000.1.v4.1 annot-version=v4.1 ATGGCAGTGATAATCCGCTGCAGCTCTTGCTTCTCTTCTCCACCCTCCTCCGATCACATCATCTCCCCCAAACCCCATCTTCCAGCTGGAAAATTGGCCT CTCTTCTGTTTAGAGCACGGAAGTTTACACCATCATCTGGAGATGCTTCAAGTATACTATCTGCTTCTCGCCATAAGTTGCCAGGCAGCGAAAGTGTGCA CATAAGGCCTGCATCAGAAGGGCATCTGAACACTGTTCAAGTACCGCCTGTTTGTGACAAATTTCTTGAACTATTGTCTGCTCATCAGGGAAACATGCAA TTGAGATCCTCGGCAATGGCTTTTCTTGTTACTAATGCCTTGATGTGGACTACCCCTTTTGAAGCTCTAGCTGAAACATGTGAGGCAGATAGCTCTATCT TCAACATGCCTTTGCTGTTATTTGTGGCCCTTGTAGGGGCCACTGTTGGAGGGTTGCTTGCACGGCAGAGGAAAGGGGAATTGCAGCGGCTGAATGAGCA ATTACGCCAGATCAATGCAGCTCTAAGAAGGCAAGCCAAGATCGAGTCCTATGCCCCCACCTTGAGCTATGCTCCTGTTGGTAGTAGAATACTAGAGAGT GAAGTGATTGTTGATCCAAGGAAGGAGGAGTTGATTTCTCGATTGAAAGTTGGAAAGAATTTTTTGCGGAATCAAGATCCAGAGAAGGCATTTGTGGAGT TTAAGTCAGCTCTTGAGCTTGCTCAGAACCTGAAGGATCCAACAGAGGAGAAGAAGGCTGTAAGAGGTTTAGGAGCCTCACTGCAAAGGCAGGGTAAACT TCAAGAAGCTATTAAATATCACTCAATGGTTCTTGCAATCTCCAAGAGAGAAGGAGAGGAATCCGGAAACACGGAGGCATATGGAGCAATAGCGGATTGC TACACTGAACTTGGTGATCTCGAGCAAGCTGCCAAATTTTATGACAAATATATTGCAAGGTTGGAAACAGACTGA
AA sequence Show only first row Show all	>Potri.001G166000.1 pacid=42791902 polypeptide=Potri.001G166000.1.p locus=Potri.001G166000 ID=Potri.001G166000.1.v4.1 annot-version=v4.1 MAVIIRCSSCFSSPPSSDHIISPKPHLPAGKLASLLFRARKFTPSSGDASSILSASRHKLPGSESVHIRPASEGHLNTVQVPPVCDKFLELLSAHQGNMQ LRSSAMAFLVTNALMWTTPFEALAETCEADSSIFNMPLLLFVALVGATVGGLLARQRKGELQRLNEQLRQINAALRRQAKIESYAPTLSYAPVGSRILES EVIVDPRKEELISRLKVGKNFLRNQDPEKAFVEFKSALELAQNLKDPTEEKKAVRGLGASLQRQGKLQEAIKYHSMVLAISKREGEESGNTEAYGAIADC YTELGDLEQAAKFYDKYIARLETD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Potri.001G166000 [exp]	0	1
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Potri.007G101600 [exp]	2.44	0.7894
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	4.89	0.7603
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.019G071700 [exp]	7.48	0.7095	Pt-HSDH.1
AT4G26288			unknown protein		Potri.009G120300 [exp]	7.93	0.8089
AT3G61170			Tetratricopeptide repeat (TPR)...		Potri.002G155100 [exp]	8.83	0.7116
AT4G21060			Galactosyltransferase family p...		Potri.006G011300 [exp]	10.09	0.7991
AT1G31940			unknown protein		Potri.001G135000 [exp]	10.19	0.7776
AT4G02830			unknown protein		Potri.005G208800 [exp]	15.23	0.7953
AT3G45400			exostosin family protein (.1)		Potri.013G067400 [exp]	16.97	0.7986
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.001G400900 [exp]	18.70	0.6739

Compare expression of checked genes

Potri.001G166000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.