Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19180 112 / 1e-29 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G72450 105 / 4e-27 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT1G17380 103 / 4e-26 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT1G74950 100 / 4e-25 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT5G20900 65 / 2e-12 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT1G70700 62 / 4e-11 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT3G43440 56 / 1e-09 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT3G17860 57 / 3e-09 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 56 / 7e-09 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT5G13220 50 / 2e-07 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068900 [exp] 373 / 1e-131 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.006G139400 [exp] 159 / 2e-47 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.018G047100 [exp] 69 / 6e-14 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.006G217200 [exp] 66 / 2e-12 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.003G165000 [exp] 60 / 1e-10 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.012G044900 [exp] 59 / 8e-10 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.001G062500 [exp] 56 / 3e-09 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.015G035800 [exp] 55 / 1e-08 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 54 / 3e-08 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027648 [exp] 130 / 5e-36 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10039911 [exp] 129 / 9e-36 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10013166 [exp] 115 / 8e-31 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10008129 [exp] 106 / 3e-27 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10002576 [exp] 55 / 4e-09 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10011929 [exp] 50 / 3e-07 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10014700 [exp] 50 / 7e-07 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10000490 [exp] 49 / 2e-06 AT4G14720 184 / 8e-55 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10035804 [exp] 48 / 3e-06 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10027639 [exp] 43 / 8e-05 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF09425 [poplar] [flax] Jas_motif Jas motif
Representative CDS sequence Show only first row Show all	>Potri.001G166200.2 pacid=42788903 polypeptide=Potri.001G166200.2.p locus=Potri.001G166200 ID=Potri.001G166200.2.v4.1 annot-version=v4.1 ATGGCGAATTTAGCACAGAATTCCTGCAAGTCACCTGACCAGATATCGAGCTTTGCTAAAAAATGCAATCTTTTGAGCCAGTACTTGAAGGAGAAAGGGA GCTTTGGAGACATCAGCCTTGGAATCAATGGAAAGGCTCCTGAAGTTAAAGGTCCTGAGACATCTGATTTGCCAGCAACAACATTGAATCTACTCACCAA CATGGAAAATTCATCTGAACATATCACTTTCAGACAAAAGCCTGTGGCATCTTCAAACATGATGAAATCCATGGATTTCTTTCCTCAGTTTGTGGGTTTC AGTCCTTCAAATTACACAGAAGACGCCATCAACAAGGCTGATAATCACTTGAGGAAATCATCTACAATGGATCCTGGACCTACCCAAATGACTATATTTT ACGCTGGAAAACTGACTGTGTTTAATGACATTCCGGCTGGTAAGGCCGAGGAGATCATGGCTTTGGCCACCAAGGGAAGCTCTATCAGTCCTAATGGGTT TCCCTCTGATCCTTCAATAATAAAAGTTAACTCCGCCAATTCTGTTGCTGCTCTTGATTCCAATAATGCCCAACAAAGACTGCATTTACAATCTGAAGCG CCTAACGGTTCAGATGTGCCACATGCTACAAGAGCATCACTTCATCGGTTCTTCTCCAAGAGGAAAGAAAGGGTTACAGCAAGAGCACCGTATCAAACAC ACAACCCAACTCATGATCTTCCTAGTTCGTCAAGACCCAAAGAAGACAGTAACTCGTTGCTTGCCCTAAACGAAGGCCAATCATCAAAGCAGCTAGAGCT TAAGTTGTAA
AA sequence Show only first row Show all	>Potri.001G166200.2 pacid=42788903 polypeptide=Potri.001G166200.2.p locus=Potri.001G166200 ID=Potri.001G166200.2.v4.1 annot-version=v4.1 MANLAQNSCKSPDQISSFAKKCNLLSQYLKEKGSFGDISLGINGKAPEVKGPETSDLPATTLNLLTNMENSSEHITFRQKPVASSNMMKSMDFFPQFVGF SPSNYTEDAINKADNHLRKSSTMDPGPTQMTIFYAGKLTVFNDIPAGKAEEIMALATKGSSISPNGFPSDPSIIKVNSANSVAALDSNNAQQRLHLQSEA PNGSDVPHATRASLHRFFSKRKERVTARAPYQTHNPTHDLPSSSRPKEDSNSLLALNEGQSSKQLELKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.001G166200 [exp]	0	1
					Potri.010G150750 [exp]	1.00	0.9755
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G038500 [exp]	1.73	0.9587	Pt-GMMYB29.2
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088800 [exp]	3.16	0.9579
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.011G083900 [exp]	3.46	0.9586
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.003G165000 [exp]	3.74	0.9595
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.006G139400 [exp]	4.24	0.9548
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046900 [exp]	6.00	0.9536	ERF11,Pt-EREBP1.3
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030519 [exp]	8.71	0.9322
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	9.16	0.9430
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	9.16	0.9544

Compare expression of checked genes

Potri.001G166200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.