Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42880 512 / 1e-173 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 499 / 2e-168 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 387 / 9e-125 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 374 / 4e-120 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT3G02880 310 / 8e-96 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 302 / 1e-92 RKL1 receptor-like kinase 1 (.1) AT2G26730 296 / 5e-90 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 291 / 2e-88 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G17840 288 / 3e-87 RLK902 receptor-like kinase 902 (.1) AT1G72460 285 / 3e-86 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068800 [exp] 989 / 0 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 585 / 0 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 411 / 1e-133 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 291 / 1e-88 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.005G141200 [exp] 261 / 5e-77 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 243 / 1e-70 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 239 / 2e-69 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 237 / 2e-68 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.006G228400 [exp] 235 / 1e-67 AT1G68400 357 / 3e-114 leucine-rich repeat transmembrane protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013165 [exp] 520 / 2e-176 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 409 / 2e-132 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 402 / 4e-130 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 370 / 6e-122 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 372 / 6e-118 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 350 / 6e-114 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 354 / 2e-112 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 344 / 2e-109 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 316 / 2e-98 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10037687 [exp] 239 / 4e-73 AT1G72460 212 / 4e-64 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G166300.1 pacid=42789734 polypeptide=Potri.001G166300.1.p locus=Potri.001G166300 ID=Potri.001G166300.1.v4.1 annot-version=v4.1 ATGACCGAAAAACATGGAAATTCAACAAATCCCCACAAAAAATCACACGGGAAATTGCAGTGCAAAAACTTGTCAAGCTCTTTTGCCAAAGTAATGGGAT TAGATTGGCATTTCCATCCATTTCTTTTTCTCTTCATCATTTTTACCCTCCATTTTTCGTTAACATCTTCTGTTTCTGATTCTGAAGCTTTGCTTAGGCT TAAAAAATCATTTACTAACGCTGGTGCTCTTAGCTCTTGGATCTCAGGCTCTGTCCCTTGCAATAGACAAACTCACTGGAACGGACTTCTTTGTTTCAAT GGCATTGTCACGGGTCTTCAGCTCGAAAACATGGGCTTATCAGGAACCATTGACGTTGATGCATTGGCTACTATACAGGGACTCAGGAGCCTAAGCTTTG CTCGTAATTCTTTTACAGGTGCAATTCCTGAACTCAATCGTTTAGGCAATTTAAAGGCTATATACTTGAGAGGGAACCAGTTTTCTGGTGAGATTCCCTC GGATTTCTTCTCGAAGATGAAGTCTCTGAAGAAAGTTTGGCTCTCCGATAACAAGTTTACTGGAGGAATTCCACCATCACTGGCTGAGTTGCCTCGGCTT AGCGAATTACATCTCGAGAACAATCAGTTTAGTGGGACTATTCCATCTATTGATCAACCAACATTGATGTCATTTAATGTGTCAAACAATATGCTGGAAG GGGAAATCCCACCGAATTTAGCAATATTCAATTATAGTTCCTTTGATGGAAATGATCATCTCTGTGGAGACAGATTTGGCAGAGGGTGTGAAAACACAAT GCAGACATCATCAGAATCACCAACCGGTGTTGGTTTGGATGCTGATATGATGGTTAGCAAAGACAGAGGTCATAACAGCAATAATGTTATAAAGACAGTC GCGGGGGCCGTAACTCTGGCTGTGTTGCTTCTTTCTATAACAGCATTGATAATCTTTAGAATGAGGCGAAGGGACAAAGATTTTGATGTGATTGAAAATA GTAGTAATGGTAATGCAGCAGCAGCAGCACTTGAGGTGCAAGTTTCGTTGTCGAATAGACCAAAGGGAGTGGATGCTACCAAAAAGATGGGATCAAGCCG TAAAGGGTCTAATAATGGAAGGGGTGGTGTAGGGGAATTAGTTATTGTGAACAACGAAAAAGGTGTATTTGGGTTGCCAGATTTGATGAAAGCTTCGGCA GAAGTGCTTGGAAATGGAGGAATGGGGTCTTTGTATAAGGCGCAGATGGCTAACGGTGCTATGGTGGTGGTCAAGAGAACGAGAGAAATGAATACATTGT CCAAAGATCAATTTGATGCAGAAATCAGAAAGCTAGGAAGACTGCATCATACTAATATTTTGACACCATTGGCTTTTCTTTATCGGCCGGATGAGAAGCT GTTGGTATATGAATACATGCCTAAAGGCAGTCTGCTTTATTTGTTGCATGGTGATCGAGGAACATCACATGCTGAACTCAATTGGTTTGTTCGTCTCAAG ATTGTTCAAGGAATTGCCAAGGGATTGGGCTATCTTCATACAAAACTTGCTTCCTCTCCCTTGCCTCATGGCAATCTAAAATCAAGCAATGTCTTTCTTA GCAATGATAACGAGCCGTTGCTTTCAGAATTTGGACTTAGTCCCCTGATCAGCCCTCCAATGTTGGCTCAAGCATTGTTTGGGTATAAAGCCCCAGAAGC AGCGCAATATGGTGTATCACCTATGTGCGACGTGTACTGTCTAGGGATCATCGTACTTGAAATCCTTACAGGAAAATTTCCTTCTCAGTATCTCAACAAG GCCAAGGGAGGGACTGATGTAGTCCAATGGGTGGAATCAGCAGTTTCCGATGGCAGAGAAACTGATTTGCTTGATCCTGAAATTGCAAGCTCAACAAATT CACTTGGTCAGATGAGGCAGCTCTTGGGTATTGGGGCTGCTTGTGTTAAAAGAAATCCTCAGCAACGGTTAGACATCACAGATGCTATTCAAATGATACA GGGCATAAAATTGGAAGACAGTAACCATGAGGGCAGGACAATGCAAGTTTTACCATCACTTCGAGATGGTTATGCAGATGCACCACAGACCAGCGTGTCT GATATTCAAGAAGTTGATGGGGAGAGCCCTTGGAGGAGACATGGATCAGGTAGCTTTATGGATGGAACTAAACACCCGAGTCGTGATCATTTTTCTTTTC CGGCTCCTATTTAG
AA sequence Show only first row Show all	>Potri.001G166300.1 pacid=42789734 polypeptide=Potri.001G166300.1.p locus=Potri.001G166300 ID=Potri.001G166300.1.v4.1 annot-version=v4.1 MTEKHGNSTNPHKKSHGKLQCKNLSSSFAKVMGLDWHFHPFLFLFIIFTLHFSLTSSVSDSEALLRLKKSFTNAGALSSWISGSVPCNRQTHWNGLLCFN GIVTGLQLENMGLSGTIDVDALATIQGLRSLSFARNSFTGAIPELNRLGNLKAIYLRGNQFSGEIPSDFFSKMKSLKKVWLSDNKFTGGIPPSLAELPRL SELHLENNQFSGTIPSIDQPTLMSFNVSNNMLEGEIPPNLAIFNYSSFDGNDHLCGDRFGRGCENTMQTSSESPTGVGLDADMMVSKDRGHNSNNVIKTV AGAVTLAVLLLSITALIIFRMRRRDKDFDVIENSSNGNAAAAALEVQVSLSNRPKGVDATKKMGSSRKGSNNGRGGVGELVIVNNEKGVFGLPDLMKASA EVLGNGGMGSLYKAQMANGAMVVVKRTREMNTLSKDQFDAEIRKLGRLHHTNILTPLAFLYRPDEKLLVYEYMPKGSLLYLLHGDRGTSHAELNWFVRLK IVQGIAKGLGYLHTKLASSPLPHGNLKSSNVFLSNDNEPLLSEFGLSPLISPPMLAQALFGYKAPEAAQYGVSPMCDVYCLGIIVLEILTGKFPSQYLNK AKGGTDVVQWVESAVSDGRETDLLDPEIASSTNSLGQMRQLLGIGAACVKRNPQQRLDITDAIQMIQGIKLEDSNHEGRTMQVLPSLRDGYADAPQTSVS DIQEVDGESPWRRHGSGSFMDGTKHPSRDHFSFPAPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42880			Leucine-rich repeat protein ki...		Potri.001G166300 [exp]	0	1
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	3.60	0.6943
					Potri.006G047250 [exp]	6.00	0.6872
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	11.22	0.5936
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	14.42	0.5939
					Potri.006G070200 [exp]	16.61	0.5617
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	19.89	0.5649
					Potri.017G071366 [exp]	28.91	0.5123
AT5G28470			Major facilitator superfamily ...		Potri.006G091600 [exp]	53.96	0.4962
AT4G31980			unknown protein		Potri.003G208001 [exp]	54.00	0.5343
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	58.86	0.4774

Compare expression of checked genes

Potri.001G166300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.