Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72470 823 / 0 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 795 / 0 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 758 / 0 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 434 / 8e-144 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G58430 358 / 2e-115 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G03540 351 / 9e-114 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT3G29400 353 / 3e-113 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G52340 351 / 1e-112 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G13150 345 / 8e-110 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 326 / 3e-102 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068700 [exp] 1073 / 0 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 460 / 2e-154 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 452 / 2e-151 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 380 / 1e-123 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.008G017800 [exp] 374 / 5e-121 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.019G124000 [exp] 372 / 8e-121 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.013G152900 [exp] 370 / 4e-120 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.017G068000 [exp] 369 / 2e-118 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.010G241800 [exp] 366 / 3e-118 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008126 [exp] 937 / 0 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 807 / 0 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 452 / 4e-151 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 447 / 3e-150 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10031956 [exp] 381 / 2e-123 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 379 / 2e-122 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 353 / 5e-113 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 343 / 2e-109 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10034151 [exp] 339 / 4e-107 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10041536 [exp] 338 / 6e-106 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.001G166400.5 pacid=42787652 polypeptide=Potri.001G166400.5.p locus=Potri.001G166400 ID=Potri.001G166400.5.v4.1 annot-version=v4.1 ATGGAACCACCAGAAAATTACAGCACAAGTACTTCTTTTGCAGAGCCTTTCGAAGATGCCCAGAAGATAATTCTGAGGTGGGACTCAACAGCATCGGAAG AAGCAAGAGAAAGAATGATCTTTGGTGGAGATCGTCAAGAAGTGGATCTATACTTACAAGCTGTTGATGAAATCCAAAAGTCTATGTCATCGACTTCAAT ATCACCTCCTTCATCCCATCATCATGATCAAGATAGTAATAGTAACAAAGTCAACTCTGCTATACAGATCGCCATGGCTAGACTTGAAGATGAGTTCCGC AATATCCTTATTAACCATACAAGCCCTGTTGAAGTAGACTCTCTTTTCATTCCTGATCATGCTCCTGCTCCTGCTTCTTCTTTGAACCACAATACTAGTT CGGTAGGAAGCAGCAATGAATTTGACCAGGAGGAAGTTGGTGGTGGTGGTGGTGATCATGTTGATGCTTTAGATCCTATACAGCGTGCAGATTCGAGTAA TAGTAGTGCTAGTTATCGATCTACGAGTAGTATTCGTGAGATCGATTTGATTCCTCAAGAAGCTGTAGCAGACCTTCAGTCCATTGCTAAACGGATGATC TCTGCAGGGTACTTGAGGGAGTGTATTCAGGTTTATGGGAGCGTGAGGAAATCAGCTGTGGATGCGAGTTTTCGGAGACTTGGGATTGAGAAGTTGAGTA TTGGGGATATTCAGAGACTAGAATGGGAGGCTTTGGAGACCAAGATCAGGAGGTGGATTAGGGCCGCCAAGGTTTGTGTTAGGATATTGTTTGCTAGTGA GAAGAAGCTTTGTGAGGAGATTTTTTATGGGATTGGTACTGCTATCGACGATGCTTGTTTTATGGAGACTGTCAAGGGTCCAGCCATTCAATTGTTTAAT TTTGCTGAGGCAATTAGTATTGGCAGGAGATCTCCTGAGAAAATGTTCAAGATTTTGGACTTACACGATGCTTTGATGGACTTGTTGCCTGATATTGAGG TTGTTTTTGAATCAAAATCTGCTGATTCCATTCGAGTCCAGGCTGCTGAGATTTTGTCAAGATTGGCTGAGGCTGCTAGGGGGATTTTATCTGAGTTTGA GAGTGCTGTTTTGCGTGAGCCTTCGAGGGTTCCGGTGCCTGGAGGGACAATTCATCCATTGACAAGGTATGTGATGAATTACATCAGTTTGATTTCGGAT TATAAGCAGACCTTGATTGAGCTTATTATGTCAAAACCATCAACTGGGTCAAGATATTCGGGTGATCCAACTACACCTGATATGGAATTTGCTGAACTAG AGGGGAAAACCCCTTTAGCCCTTCATTTGATTTGGATTATTGTGATTTTGCAATTCAATTTGGAGGGCAAGTCCAAGCACTACAAGGATGCATCGTTGGC CCATCTGTTTATAATGAACAATGTTCACTATATTGTTCAGAAGATTAAAGGGTCACCAGAATTGAGAGAAATGATTGGAGATGATTACTTGAGAAAGCTA ACAGGAAAATTCAGGCAGGCGGCAACTAGTTACCAGAGAGCAACCTGGGTGAGTGTTTTGTATTGCTTGAGGGATGAGGGGTTACATGTAAGTGGGAGTT TCTCTTCTGGTGTCTCAAAGAGTGCTTTGAGAGAGAGGTTTAAGACCTTCAATGCTATGTTTGAGGAGGTTCACAGGACTCAAGCAACATGGTTGATTCC GGATTCTCAGCTTCGGGAGGAGCTTCGAATTTCTATGTCTGAGAAGTTGATCCCAGCTTATAGGTCATTTCTTGGACGGTTCAGGAGTCACATAGAGAGT GGAAAGCATCCGGAAAATTATATCAAGTATTCAGTGGAGGATTTAGAGAGTGCTGTCTTGGATTTCTTCGAGGGTTATCCTGTATCTCAGCACCTGAGGA GGAGATCTCAGTGA
AA sequence Show only first row Show all	>Potri.001G166400.5 pacid=42787652 polypeptide=Potri.001G166400.5.p locus=Potri.001G166400 ID=Potri.001G166400.5.v4.1 annot-version=v4.1 MEPPENYSTSTSFAEPFEDAQKIILRWDSTASEEARERMIFGGDRQEVDLYLQAVDEIQKSMSSTSISPPSSHHHDQDSNSNKVNSAIQIAMARLEDEFR NILINHTSPVEVDSLFIPDHAPAPASSLNHNTSSVGSSNEFDQEEVGGGGGDHVDALDPIQRADSSNSSASYRSTSSIREIDLIPQEAVADLQSIAKRMI SAGYLRECIQVYGSVRKSAVDASFRRLGIEKLSIGDIQRLEWEALETKIRRWIRAAKVCVRILFASEKKLCEEIFYGIGTAIDDACFMETVKGPAIQLFN FAEAISIGRRSPEKMFKILDLHDALMDLLPDIEVVFESKSADSIRVQAAEILSRLAEAARGILSEFESAVLREPSRVPVPGGTIHPLTRYVMNYISLISD YKQTLIELIMSKPSTGSRYSGDPTTPDMEFAELEGKTPLALHLIWIIVILQFNLEGKSKHYKDASLAHLFIMNNVHYIVQKIKGSPELREMIGDDYLRKL TGKFRQAATSYQRATWVSVLYCLRDEGLHVSGSFSSGVSKSALRERFKTFNAMFEEVHRTQATWLIPDSQLREELRISMSEKLIPAYRSFLGRFRSHIES GKHPENYIKYSVEDLESAVLDFFEGYPVSQHLRRRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.001G166400 [exp]	0	1
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.005G172900 [exp]	22.22	0.6998
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.003G129300 [exp]	23.36	0.7352
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.006G270500 [exp]	25.69	0.7063
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	26.05	0.6747
AT3G05990			Leucine-rich repeat (LRR) fami...		Potri.008G150200 [exp]	30.85	0.6840
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.003G157100 [exp]	31.87	0.7434
AT2G39435			Phosphatidylinositol N-acetygl...		Potri.010G211700 [exp]	33.49	0.7258
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.008G103500 [exp]	72.52	0.7159
AT5G50760			SAUR-like auxin-responsive pro...		Potri.003G167400 [exp]	86.98	0.6988	SAUR1
AT5G01830			ARM repeat superfamily protein...		Potri.016G134000 [exp]	97.21	0.6613

Compare expression of checked genes

Potri.001G166400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.