Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19110 753 / 0 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 749 / 0 unknown protein AT1G08050 52 / 2e-06 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 52 / 2e-06 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 49 / 2e-05 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 46 / 0.0001 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068000 [exp] 1345 / 0 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.018G062500 [exp] 811 / 0 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.009G010350 [exp] 56 / 1e-07 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 53 / 9e-07 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 47 / 5e-05 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 46 / 8e-05 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008122 [exp] 979 / 0 AT1G19110 732 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10013159 [exp] 932 / 0 AT1G19110 709 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10039919 [exp] 758 / 0 AT1G19110 877 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10027666 [exp] 751 / 0 AT1G19110 874 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10041321 [exp] 52 / 2e-06 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 51 / 4e-06 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 50 / 7e-06 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 50 / 1e-05 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 49 / 2e-05 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF13768 [poplar] [flax] VWA_3 von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Potri.001G166800.1 pacid=42789967 polypeptide=Potri.001G166800.1.p locus=Potri.001G166800 ID=Potri.001G166800.1.v4.1 annot-version=v4.1 ATGGCGAGAGAGTTCGCAACATGCGTGGAGTACGGATTGAGTCTTTCGAAGAGAATTTACTACGGAAAGGAAATGACCCCGGCGGTATCGGCAGCGATGA CGCGGTCGATGTCATCGAAGTCATCGGAGTTGGCGGAGAGTTACTTGCCGACTGCGGTGATGGCTTATGCGGTGGTTCCGGAGCCGGAGCTGGTGGACAA TCCAGACGTCCCTAGTTATCAGCCGTACGTTCATGGGCGGTGTGAGCCGCCGGCGTTGATACCATTGCAGATGCATGGAGCGGTGGCTATGGAGATTGAT TGCTGTTTTGATCATGCAAACGTTTGTTTTAGCGGCGCGTGGCGCGTGCATTGTATTAAAGCGAGTAGGAAATGTGATGTCCGCATTGCCGTTCCCATGG GAGAGCAGGGTTCACTTCTAGGTGTCGAGGTTGATGTTACTGGAAGATCTTATCATAGTCAGTTGATCCAAGCAGAAGATGCAAATGGCAATGAAAAAGT AAGCAGAGGATGGAATGGGCGTTTAATAAAAGGCAGCATGTATAGTTTTGAAATTCCAGAGGTTGGAGGAGGGTCAACTTTCTCGATCAAAGTGACTTGG TCTCAAAAGTTGCTATATCATGAGGGTCAATTCAGTCTCAATGTACCATTTAGTTTTCCATCATTTGTCAATCCCATCGGCAAGAAGATTTCTAAGAGGG AAAAGATACTTTTGAATGTGAACTCTGGTGTTGGTAAAGAAATTTTATGCAGGTGTGCTAGCCATGCTCTAAAGGAGCTCAGGCGTGAAGTTGGTAAAAT GGGTTTCTTATATGATGCAGAAGTACTGACTTGGTCAAGTGCTGACTTCAGTTTTTCCTACAACGTCTACTCCAAGGATTTATTTGGTGGTGTGCTTTTG CAGTCCCCATTCTTACGAGATTTTGATGACAGACAAATGTTTTGCTGCTATCTATTTCCTGGAGACAACCAGAGCATGAAAGCTTTCAGGAAGGAAGTGA TATTCTTAATTGATATCAGTGGAAGCATGAAAGGGAATCCTTTCGAGAGTGCAAAGAATGGATTATTGTCATCTCTCCAGAAGCTCAACCCAGAAGATTC TTTCAACATTATAGCGTTCAATGTGGAGACCTACTTATTCTCATCATTAATGGAACAGGCAACTAAAGAAGCAATATTAAAAGCTACTCAGTGGCTTAAT GATAACTTAACTGCAGATGGTGGCACCAACATTTTAGCCCCCCTCGAACAGGCTTTAAAGCTGTTGGCTGAAACTACTGATTCAATTCCTCTCATTTTCC TCATCACTGATGGGGCTGTTGAAGATGAAAGAGATATTTGCAATTTTGTCAAAGGTTCTCTCACAAGCGGGGGATCGATTTCTCTTCGCATATGTACATT TGGTATAGGTACATATTGTAATCACTATTTCTTGCGAATGCTTGCACAAATTGGGAGGGGTCACTTTGATACAGCTTATGATGCAGATTCGGTTGATTTT CGAATGCAGAGATTATTCGCAACTGCATCATCAATCATTCTAGCCAATATAACCGTTGATGCTTTGGAATCTCTAGACTCGCTTGAGTTGCTTCCGTTTT GTATCCCAGACCTCTCATGTGGATGCCCATTGATTGTATCTGGGAGGTATAGTGGAAACTTCCCAGACTCTGTCAAGCTAAGTGGCATCTTGGCAGACAT GAGGAAGTTCACAATAGACATAAAAGCGCAAAAGGCAAAGGATCTGCCTGTTGATAGAGTAGTTGCAAGGAGACAAATTGATTTACTCACAGCTAATGCA TGGTTGTCAGGAAGTAAAGAACTGGAACAGAAGGTTGCAAAAATGAGCATACAATCTGGGGTTCCATCTGAATACACCCTCATGGTTTTACATCACACTC TTAGAGAAGAGAAAGCCTCGGAAACAATTCTGATACAGAATGTGTTCAACAAGATCAACCCCCTTAAGAAAATGGACTTACAGACGAAAATCATGTTAGG GAACCTATGCGTTGGCTTTGGCAACTTGAGTGCAACAGCTGAGAACATTCCTCCAGGAACTGAGGAGACAAAGTCATCTGATGCAACTGAGATGTTCAAT GCTGCTTCAAACTGCTGTAGCAGGGTGGTGGAGCGCTGCTGTTGCATGTGCTTCATTCAAACTTGTTCATATATGAATAATCAATGCGCTATTGTCCTCT CCCAGCTCTGTGCCGCCCTTGCTTGCTTTGAGTGCATGAACTGTTGTATTGAGCTCTGCGAATGCGGGTAA
AA sequence Show only first row Show all	>Potri.001G166800.1 pacid=42789967 polypeptide=Potri.001G166800.1.p locus=Potri.001G166800 ID=Potri.001G166800.1.v4.1 annot-version=v4.1 MAREFATCVEYGLSLSKRIYYGKEMTPAVSAAMTRSMSSKSSELAESYLPTAVMAYAVVPEPELVDNPDVPSYQPYVHGRCEPPALIPLQMHGAVAMEID CCFDHANVCFSGAWRVHCIKASRKCDVRIAVPMGEQGSLLGVEVDVTGRSYHSQLIQAEDANGNEKVSRGWNGRLIKGSMYSFEIPEVGGGSTFSIKVTW SQKLLYHEGQFSLNVPFSFPSFVNPIGKKISKREKILLNVNSGVGKEILCRCASHALKELRREVGKMGFLYDAEVLTWSSADFSFSYNVYSKDLFGGVLL QSPFLRDFDDRQMFCCYLFPGDNQSMKAFRKEVIFLIDISGSMKGNPFESAKNGLLSSLQKLNPEDSFNIIAFNVETYLFSSLMEQATKEAILKATQWLN DNLTADGGTNILAPLEQALKLLAETTDSIPLIFLITDGAVEDERDICNFVKGSLTSGGSISLRICTFGIGTYCNHYFLRMLAQIGRGHFDTAYDADSVDF RMQRLFATASSIILANITVDALESLDSLELLPFCIPDLSCGCPLIVSGRYSGNFPDSVKLSGILADMRKFTIDIKAQKAKDLPVDRVVARRQIDLLTANA WLSGSKELEQKVAKMSIQSGVPSEYTLMVLHHTLREEKASETILIQNVFNKINPLKKMDLQTKIMLGNLCVGFGNLSATAENIPPGTEETKSSDATEMFN AASNCCSRVVERCCCMCFIQTCSYMNNQCAIVLSQLCAALACFECMNCCIELCECG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.001G166800 [exp]	0	1
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028700 [exp]	5.09	0.7617
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.001G311700 [exp]	9.16	0.7072	MSJ1.1
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G089800 [exp]	11.00	0.6926
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.010G095200 [exp]	12.24	0.6987	Pt-CYCD1.1
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	13.41	0.6933
AT5G54400			S-adenosyl-L-methionine-depend...		Potri.011G128300 [exp]	15.42	0.6875
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.001G442800 [exp]	17.29	0.6888
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Potri.012G016100 [exp]	20.68	0.7214
AT5G66600			Protein of unknown function, D...		Potri.007G033100 [exp]	24.91	0.6933
AT2G05760			Xanthine/uracil permease famil...		Potri.014G157800 [exp]	32.32	0.7016

Compare expression of checked genes

Potri.001G166800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.