Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LOX3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17420 1444 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 1428 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 914 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 772 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G55020 743 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 728 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G067600 [exp] 1152 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.010G057100 [exp] 1005 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 990 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G015500 [exp] 869 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 866 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 865 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 851 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 814 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.005G032400 [exp] 745 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015666 [exp] 1488 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 1487 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 1482 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10006429 [exp] 917 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031810 [exp] 813 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 803 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 800 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 787 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 783 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 752 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [poplar] [flax] Lipoxygenase Lipoxygenase CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G167700.1 pacid=42792198 polypeptide=Potri.001G167700.1.p locus=Potri.001G167700 ID=Potri.001G167700.1.v4.1 annot-version=v4.1 ATGGCACTAGCTACAGAAATCATTGGGGGTCGTTTGATTGATGGATCATCATTTTTACCAACGTCAAAAATGTTGACGAACCAAAGGGTAGGAATGGTTA AGAGGAACCAGTTCTTGGGGAGTCCAGTTTTGGTGCCTTCGCAACAAATTAGAAGACAGGAGCAGTTAAAGAGAGCCGTGAGGGCTCCTGTGGCAGCTAT TAGTGAAGATATAATTAAGACCAACAACAAAACTACTGTGCCTGAAAAGGCAGTGAATTTCAAGGTGAGAGCTGTGGTGACTGTGAGAAACAAGCACAAG GAGGACTTGAAGGCGACTATTGTGAAGCAGTTGGATTCTTTCACTGACAAGATTGGGAGAAATGTTGTTTTGGAGCTTATTAGCACTGATGTTGATCCAA AAAGCAAGGAACCAAAGAGGAGCAAGCCAGCTGCGTTGAGAGACTGGTCAAAGAAATCAAATCTTAAAGCTGAGAGGGTCCATTACACTGCTGAATTTAC AGTTGACTCAAATTTCGGTGTGCCTGGGGCAATCACAGTGAGCAACAAGCATCAACAGGAGTTTTTCATGGAGAGTATCACCATTGAAGGTTTTGCTTGT GGTCCAGTCCATTTCCCTTGCAACTCATGGATACAATCTAAGAAAGATCATCCTGGGAAGAGAATTCTTTTCTCTAATAAGCCATATTTACCAAGTGAGA CACCAGCTGGGCTTCGAGCATTGAGAGAGAAGGAACTGAGGGATCTTAGGGGCGATGGAAAAGGAGTTAGAAAATTGTCAGATAGGATTTACGACTTCGA TGTGTACAATGATTTGGGAAATCCAGACAAGAGCGTTAACTTGACTAGACCAAGTCTTGGCGGTAAAAAAATCCCATTCCCAAGACGATGCCGTACTGGT CGCCTCCCAATGGACTCTGATATCACTGCAGAGAGCCGAGTGGAGAAGCCATTGCCACTATACGTGCCTAGAGATGAACAATTTGAGGAGTCTAAGAAAA ACACTTTCTCAGCTGGGAGGCTTAAATCAGTGCTTCATAACATAATACCATCCCTCAAGGCAACCATTTCTGCTGAAAATCATGACTTCAGTGGCTTCTC AGACATTGATATTCTCTACAAAGAAGGGCTTCTTCTTAAAGTAGGGTTGCAAGATGAAATCTGGAAGAACCTACCATTGCCCAAAGTGGTTACTAAGATA CAAGAATCTAGTGAGGGATTGCTCAAATATGACACGCCAAAGATCCTTTCCAGGGACAAGTTTGCCTGGTTGAGAGACGACGAATTTGCTCGTCAAGCCG TCTCAGGAGTTAACCCAGTTAGCATTGAGAGCCTCAAGGTTTTTCCACCAAAAAGCAATCTTGATCCTGAAATTTACGGTCCGCAAGAATCCGCTTTCAA GGAGGAACACATTCTGGGCCATCTTAATGGCTTGTCCGTTTCGCAGGCCTTGGAGGAAAACAAACTGTTTATAATTGATTACCATGATGCTTATCTCCCA TTTTTGGACCGGATTAATGCCCTTGATGGTAGAAAAGCGTATGCAACTCGTACCATGTTTTTCTTGACGCCTCTTGGGACACTTAAGCCCATCGCTATAG AGCTTAGCCTCCCACCAGCGGGGCCAAATTCCCGATCAAAGCGTGTGGTTACACCTCCTATGGATGCAACTAGCAATTGGGTTTGGCAACTCGCTAAGGC TCATGTTTGCTCCAACGATGCTGGTGTTCACCAGCTTGTCAATCACTGGTTACGTACACATGCTTCCCTGGAGCCATTTATACTAGCAGCGCACAGGCAA ATGAGTGCAATGCATCCTATTTTCAAACTTTTGGATCCACACATGAGATATACACTAGAGATCAATGCCTTAGCCCGCCAAAACTTAATCAATGCTGATG GTGTTATTGAGTCTTGCTTCACTCCCGGCCGCTATTGTATGGAGATCAGCGCAGCTGCCTACAAAAGCTCTTGGCGTTTTGACAAGGAAGGCCTCCCTGC CGATCTCATTCGCAGGGGTATGGCAGTACCTGACCCAACACAACCACACGGTCTAAAGCTTCTAATTGAGGACTACCCATATGCCCAAGATGGGCTACTA ATCTGGTCTGCAATCGAGAACTGGGTTCGCACCTATGTTGAGCGTTACTACCCAGATTCAAGCTTGGTTTGTAATGACAAGGAGCTACAAGCATGGTATT CTGAGTCCATCAATGTAGGTCATTTCGATCTTCGTGATGCTGACTGGTGGCCCAAGCTGGAAACCACTGACGATCTTGTCTCGATCCTCACCACCATCAT CTGGCTTGCATCCGCACAGCATGCCGCGCTCAATTTTGGGCAGTACCCCTATGGTGGTTATGTGCCTAATAGACCGCCCCTAATGAGAAGATTAATTCCC GAAGAAAATGACCCCGAGTATGCAAATTTCCTGGCTGATCCACAAAAATATTACCTATTGGCACTGCCAAGTTTATTGCAAGCAACAAAATTCATGGCTG TGGTGGACATATTATCAACACACTCACCGGACGAGGAGTACATAGGGGAACGACAACAGCCGTCAATATGGTCAGGCGATGCTGAAATAATCGAGGCATT TTATGAGTTCTCGGCAGAGATTCAGCAGATCGAGAAGGAGATAGACAGAAGGAATGCTGATCCTCGCCTTAAGCACCGGTGTGGTGCAGGGGTGCTGCCA TATGAATTACTAGCCCCTAGTTCAGGACCTGGAGTTACATGTAGAGGTGTCCCAAATAGCGTGTCAATATAA
AA sequence Show only first row Show all	>Potri.001G167700.1 pacid=42792198 polypeptide=Potri.001G167700.1.p locus=Potri.001G167700 ID=Potri.001G167700.1.v4.1 annot-version=v4.1 MALATEIIGGRLIDGSSFLPTSKMLTNQRVGMVKRNQFLGSPVLVPSQQIRRQEQLKRAVRAPVAAISEDIIKTNNKTTVPEKAVNFKVRAVVTVRNKHK EDLKATIVKQLDSFTDKIGRNVVLELISTDVDPKSKEPKRSKPAALRDWSKKSNLKAERVHYTAEFTVDSNFGVPGAITVSNKHQQEFFMESITIEGFAC GPVHFPCNSWIQSKKDHPGKRILFSNKPYLPSETPAGLRALREKELRDLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSVNLTRPSLGGKKIPFPRRCRTG RLPMDSDITAESRVEKPLPLYVPRDEQFEESKKNTFSAGRLKSVLHNIIPSLKATISAENHDFSGFSDIDILYKEGLLLKVGLQDEIWKNLPLPKVVTKI QESSEGLLKYDTPKILSRDKFAWLRDDEFARQAVSGVNPVSIESLKVFPPKSNLDPEIYGPQESAFKEEHILGHLNGLSVSQALEENKLFIIDYHDAYLP FLDRINALDGRKAYATRTMFFLTPLGTLKPIAIELSLPPAGPNSRSKRVVTPPMDATSNWVWQLAKAHVCSNDAGVHQLVNHWLRTHASLEPFILAAHRQ MSAMHPIFKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEISAAAYKSSWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAQDGLL IWSAIENWVRTYVERYYPDSSLVCNDKELQAWYSESINVGHFDLRDADWWPKLETTDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP EENDPEYANFLADPQKYYLLALPSLLQATKFMAVVDILSTHSPDEEYIGERQQPSIWSGDAEIIEAFYEFSAEIQQIEKEIDRRNADPRLKHRCGAGVLP YELLAPSSGPGVTCRGVPNSVSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	0	1	LOX3.1
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226400 [exp]	1.41	0.9713
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226500 [exp]	2.00	0.9638
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	3.00	0.9634
AT2G46400	WRKY	ATWRKY46, WRKY4...	WRKY DNA-binding protein 46 (....		Potri.002G168700 [exp]	3.00	0.9481
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.008G117300 [exp]	4.12	0.9349
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.005G119800 [exp]	4.47	0.9470	RPP13.1
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	5.00	0.9564
AT4G21865			unknown protein		Potri.008G172000 [exp]	6.00	0.9536
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	6.92	0.9613	WRKY40.2
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.002G130700 [exp]	7.48	0.9505	AOS.7

Compare expression of checked genes

Potri.001G167700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.