Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 353 / 1e-116 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 333 / 8e-109 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT2G45570 324 / 3e-105 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 322 / 2e-104 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G26330 322 / 2e-104 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT4G22710 314 / 3e-101 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT3G48280 311 / 2e-100 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT4G22690 312 / 3e-100 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G44620 310 / 6e-100 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT3G26320 310 / 7e-100 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066600 [exp] 686 / 0 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 683 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 653 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 651 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 650 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 555 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 552 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 377 / 2e-125 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 362 / 4e-120 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008112 [exp] 640 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 637 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 525 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 357 / 8e-118 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10017961 [exp] 347 / 4e-114 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021158 [exp] 340 / 3e-111 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10028897 [exp] 339 / 4e-111 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10021620 [exp] 339 / 6e-111 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10041951 [exp] 330 / 3e-107 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10008936 [exp] 326 / 5e-106 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G167800.1 pacid=42788637 polypeptide=Potri.001G167800.1.p locus=Potri.001G167800 ID=Potri.001G167800.1.v4.1 annot-version=v4.1 ATGGACAATCCTCCTCCGCCAGCGATTACTTATACCGCCGCTGGTCTTGCCACCGTAGTGCTAATCCTCCTCTCTCGCCGCCTTTTCAGCCGTAAACTAA AACTTCCACCAGGCCCAAAACCATGGCCTATAATCGGAAACTTCAACCTTATAGGTCCACTTCCCCACCGCTCCCTTCACGAACTTGCCAAGAAATATGG ACCCATTATGCAAATCAAATTTGGGTCAATCCCCGTGGTTGTAGGCTCTTCCGCTGAAGTGGCTGAAGCCATCCTCAAAACCCATGACATTAGCCTTGCC GATCGGCCCAAAATCGCTGCAGGTAAATACACCACCTATAATTACTCCGACATTACATGGTCACAATATGGGCCTTATTGGAGCCACCTGCGCAAGTTTT GCAACATGGAAATTTTTAGTCCAAAACGCCTTGATTTTTACCAGCATGTGCGTGTAGAGGAGCTGCATTCCCTGCTAAAAAGTCTTTACAAGACGAGCGG AACTCCTTTCAAAACGAGAGAGAAGTTTTCAGACTTGAGTCTTAGCGTGATTAGTCGGTTGGTGTTAGGGAGAAACTACACACTTGAATCGGAAAAAGGG AAGGGAGTGTATACACCACATGAGTTTAAGAAAATCTTAGATGAGTTGTTCGTGCTCAATGGGGTGTTAGAAATAGGGGATTGGATCCCTTGGCTCTCTT ACTTCGATTTGCAAGGGAACATCAAGAAAATGAAGGCTGTGGCCAAAAAGGTTGACAGGTTTATAGAGCATGAACTGGAGGAACACGATGCTAGGAGAAA TGGGGTTAAGAACTATGTGGCTAAGGATATGATGGATATCCTCTTACAACTTTCCGATGATCCTAGTCTTGATGTCGAATTCGGAAGAACCGGAGTGAAG GCCCTCACGCTGGACTTGATTGCGGGCGGAACTGAGAGCACTGCAGTGACAGCAGAATGGGCGCTAGCCGAGCTTTTGAAGAAGCCAGAGATTTTTGAGA AGGCAACAGAAGAGCTAGATAGAGTAATCGGAAGAGAAAGATGGGTAGAAGAAAAAGACATCGTTGACTTACCTTATGTTACTGCAATCATGAAAGAGAC CATGCGTCTACACAATGTGTCGCCATTACTGGTCCCAAGAGTTGCCCGTGAAGACGTTCAAATTTCTGGCTATGATATTCCAAAAGGCACTGTTGTGATG GTGAATGTATGGACCATTGGGAGGGATCCTAAGATATGGGACAACCCTAATGAATTTTGTCCGGAGAGATTTCTCGGTGAGGAGATTGAAGTTGAAGGTC AAAACTTTAAGCTAATGCCCTTCGGAGCTGGCAAGAGGATTTGCGTTGGGTACCCTCTTGGGTTAAAGATAATTCAATCGAGTGTGGCAAATCTCTTGCA TGGATTTAATTGGAAATTGCCTAAAGGCATGAAGAAAGAGGACTTGGATATGGAAGAAATCTTCGCACTTTCTACTCCCAAGAAGAACCCGCTTGTCGCT GTTGCTGAGCCTCGACTTCCGCCGCATCTCTACTCCGTGTAA
AA sequence Show only first row Show all	>Potri.001G167800.1 pacid=42788637 polypeptide=Potri.001G167800.1.p locus=Potri.001G167800 ID=Potri.001G167800.1.v4.1 annot-version=v4.1 MDNPPPPAITYTAAGLATVVLILLSRRLFSRKLKLPPGPKPWPIIGNFNLIGPLPHRSLHELAKKYGPIMQIKFGSIPVVVGSSAEVAEAILKTHDISLA DRPKIAAGKYTTYNYSDITWSQYGPYWSHLRKFCNMEIFSPKRLDFYQHVRVEELHSLLKSLYKTSGTPFKTREKFSDLSLSVISRLVLGRNYTLESEKG KGVYTPHEFKKILDELFVLNGVLEIGDWIPWLSYFDLQGNIKKMKAVAKKVDRFIEHELEEHDARRNGVKNYVAKDMMDILLQLSDDPSLDVEFGRTGVK ALTLDLIAGGTESTAVTAEWALAELLKKPEIFEKATEELDRVIGRERWVEEKDIVDLPYVTAIMKETMRLHNVSPLLVPRVAREDVQISGYDIPKGTVVM VNVWTIGRDPKIWDNPNEFCPERFLGEEIEVEGQNFKLMPFGAGKRICVGYPLGLKIIQSSVANLLHGFNWKLPKGMKKEDLDMEEIFALSTPKKNPLVA VAEPRLPPHLYSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167800 [exp]	0	1
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G118900 [exp]	1.00	0.9782
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.016G031500 [exp]	2.44	0.9710
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Potri.010G178800 [exp]	3.74	0.9199
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140700 [exp]	6.70	0.9556
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.015G148500 [exp]	8.48	0.9059
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.018G051300 [exp]	9.38	0.9217
AT5G16340			AMP-dependent synthetase and l...		Potri.004G000300 [exp]	14.96	0.8956
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.009G005400 [exp]	15.49	0.9184
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150500 [exp]	16.00	0.9464	SP1.3
AT5G04160			Nucleotide-sugar transporter f...		Potri.016G043200 [exp]	16.30	0.9055

Compare expression of checked genes

Potri.001G167800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.