Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 369 / 1e-122 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G01280 345 / 2e-113 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT3G48310 331 / 2e-108 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT2G45570 332 / 3e-108 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G48280 331 / 3e-108 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G57260 331 / 4e-108 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26330 330 / 6e-108 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 330 / 1e-107 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT4G36220 330 / 1e-107 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT2G45560 329 / 2e-107 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066400 [exp] 909 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 681 / 0 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 679 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 675 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 628 / 0 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 620 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 612 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 394 / 8e-133 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 392 / 2e-131 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008112 [exp] 731 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 723 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 575 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 378 / 5e-126 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021620 [exp] 369 / 1e-122 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 364 / 1e-120 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 360 / 2e-119 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021158 [exp] 357 / 5e-118 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10016601 [exp] 355 / 3e-117 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10043308 [exp] 353 / 2e-116 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G167900.1 pacid=42788475 polypeptide=Potri.001G167900.1.p locus=Potri.001G167900 ID=Potri.001G167900.1.v4.1 annot-version=v4.1 ATGGAGACTTGGGTGTCCTATGCCTTTGCATGGCTCGCCACTGTATCCCTTATCCTGCTAGCCAGCCGTCTCCGCCGCCGCAAACTCAAACTTCCACCTG GCCCAAAACCCTGGCCAATAATTGGAAACCTCAATCTCATAGGCGAACTCCCACACCGTTCCCTCCATGCCCTCTCCCAAAAATATGGCCCCATTATGCA AGTCCAGTTTGGATCATTCCCAGTTGTTGTTGGCTCTTCCGTTGAAATGGCAAAAACCATCCTCAAAACCCATGATGTTATCTTCTCTGGCCGCCCCAAA ACAGCTGCAGGCAAATACACCACCTATAATTACTCAGATATTACATGGTCTCCGTATGGACCTTATTGGCGTCAAGCGCGTAAAATGTGCTTAATGGAAC TTTTTAGTGCTAAGCGCCTTGAGTCATACGAGTACATTCGTGTAGAGGAGTTGAAAGCACTCCTTAAAACTCTTCACAAATCAAGTGGCAGGCCTATTAA TCTAAAAGATCACCTTACAGATGTGAGTCTTAATGTAATTAGCCGCATGGTGTTAGGAAAAAAGTACACTGTTAAGAGTTCTGAAAATGAGAAGGAGATA GTGACACCAGAGGAGTTCAAGGAAATGCTTGATGAGTTGTTCTTGCTTAATGGGGTGTTGGATATCGGGGACTCAATCCCTTGGATTGCTTTCTTGGATT TGCAAGGGTACATTAAGAGAATGAAGGTTTTGTCCAAGAAGTTTGACAAGTTTATGGAGCATGTGTTGGATGAGCACGAAAGTAGGAGAAAGACAGAAGA CGAGAATTGGGAGCCCAAGGATATGGTCGACGTCCTTTTGCAGCTTGCTTCTGATCCTAATCTTGAGGTCAAGCTTGAAAGACATGGTGTCAAGGCATTT TCACAGGACTTGATTGCTGGTGGAACTGAGAGCTCTGCAGTGACCGTGGAATGGGCAATCTCAGAAATCTTGAGAAAGCCAGAGGTTTTTGAGAAAGCAT CCGAAGAGCTAGATAGGGTAATTGGAAGAGAAAGATGGGTGGAAGAGAAAGACATGGTTAATTTGCCATATATATATGCCATTGCCAAGGAGGTTATGCG TTTGCACCCTGTGGCACCAATGTTAGTCCCTAGAGAAGCACGAGAGGATATCAACGTTAATGGTTACGACATTAAAAAAGGCTCTCGTGTCCTTGTTAAT GTATGGACCATAGGAAGAGATCCCAAGGTCTGGGACAAGCCTGATGAATTTTGCCCTGAGAGATTCATTGGTAATTCTATTGATGTTAGAGGTCACGATT ATGAGCTACTGCCATTTGGAGCTGGAAGGAGGATGTGTCCTGGATATCCTTTAGGACTAAAGGTGATTCAAGCAACTTTGTCAAATCTTCTTCATGGATT TAAATGGAGATTACCTGATGGCGTGAGGAAGGAGGAGTTGAGCATGGAGGAAATCTTTGGGCTCTCCACACCGAAGAAATACCCCCTTGTTGCTGTCGCC GAGCCTCGTCTTCCAGCTCATGTTTACCCCAAGTAA
AA sequence Show only first row Show all	>Potri.001G167900.1 pacid=42788475 polypeptide=Potri.001G167900.1.p locus=Potri.001G167900 ID=Potri.001G167900.1.v4.1 annot-version=v4.1 METWVSYAFAWLATVSLILLASRLRRRKLKLPPGPKPWPIIGNLNLIGELPHRSLHALSQKYGPIMQVQFGSFPVVVGSSVEMAKTILKTHDVIFSGRPK TAAGKYTTYNYSDITWSPYGPYWRQARKMCLMELFSAKRLESYEYIRVEELKALLKTLHKSSGRPINLKDHLTDVSLNVISRMVLGKKYTVKSSENEKEI VTPEEFKEMLDELFLLNGVLDIGDSIPWIAFLDLQGYIKRMKVLSKKFDKFMEHVLDEHESRRKTEDENWEPKDMVDVLLQLASDPNLEVKLERHGVKAF SQDLIAGGTESSAVTVEWAISEILRKPEVFEKASEELDRVIGRERWVEEKDMVNLPYIYAIAKEVMRLHPVAPMLVPREAREDINVNGYDIKKGSRVLVN VWTIGRDPKVWDKPDEFCPERFIGNSIDVRGHDYELLPFGAGRRMCPGYPLGLKVIQATLSNLLHGFKWRLPDGVRKEELSMEEIFGLSTPKKYPLVAVA EPRLPAHVYPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167900 [exp]	0	1
AT5G16340			AMP-dependent synthetase and l...		Potri.004G000300 [exp]	6.70	0.8453
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.014G157600 [exp]	7.93	0.8087
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120300 [exp]	8.60	0.7658
AT1G10740			alpha/beta-Hydrolases superfam...		Potri.008G187900 [exp]	9.16	0.7975
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.015G148500 [exp]	10.58	0.8297
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	11.83	0.7738
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167800 [exp]	22.84	0.8310
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.018G051300 [exp]	24.49	0.7942
AT3G52500			Eukaryotic aspartyl protease f...		Potri.016G071900 [exp]	30.74	0.7742
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G118900 [exp]	32.71	0.8283

Compare expression of checked genes

Potri.001G167900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.