Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 518 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT1G72540 497 / 1e-174 Protein kinase superfamily protein (.1) AT2G26290 468 / 1e-163 ARSK1 root-specific kinase 1 (.1) AT5G35580 461 / 1e-159 Protein kinase superfamily protein (.1) AT5G01020 419 / 9e-145 Protein kinase superfamily protein (.1) AT1G61590 404 / 2e-138 Protein kinase superfamily protein (.1) AT2G07180 382 / 1e-129 Protein kinase superfamily protein (.1.2) AT3G28690 377 / 7e-129 Protein kinase superfamily protein (.1.2.3) AT5G56460 377 / 3e-128 Protein kinase superfamily protein (.1) AT5G15080 378 / 1e-127 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066300 [exp] 717 / 0 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 556 / 0 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 523 / 0 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 422 / 2e-145 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 421 / 3e-145 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 420 / 7e-145 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 420 / 7e-145 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 394 / 1e-135 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 387 / 1e-132 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013148 [exp] 558 / 0 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 554 / 0 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10034897 [exp] 507 / 1e-177 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 503 / 4e-176 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 474 / 4e-165 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 471 / 5e-164 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 411 / 3e-142 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 413 / 1e-141 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 412 / 5e-141 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 382 / 6e-129 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G168000.1 pacid=42792426 polypeptide=Potri.001G168000.1.p locus=Potri.001G168000 ID=Potri.001G168000.1.v4.1 annot-version=v4.1 ATGGTTCTCAAAAAGTTCACATGGAAATCAATACTCCCAGGATGTCTCAAAAGCGAGAGCTCATCTTACCCAGAGCCAAAACAAATATGTTCCCAGAGAC TATCAATATCCGACTTCAGCAATCCTGGTTCGCCAATCTCATTCAGTGACCTATCCAGTTCTATATTTAACCTTCATGTTTTCGCTCTGAAAGAGTTAAG AACAATAACACATGAGTTCTCAAAAAGCAATTATCTGGGGGAAGGTGGATTTGGAGCTGTATACAAAGGTTTCATTGACGACAAGCTCAGGCCGGGATTA AAGGCTCAGCCTGTGGCTGTCAAGGCATTGGATCCGGATGGCTCTCAAGGACATAGAGAGTGGCTGGCCGAAGTCATCTTTCTTGGGCAATTAAAGCATC GCCATCTTGTGAACTTGATCGGCTACTGCTGCGAGGATGAGCATCGGCTTCTTGTGTATGAATACGTAGAGCGAGGCAACCTAGAGGACAAACTATTCTA CAGATATTCTGCAGCCTTGCCTTGGTTAACAAGACTAAAGATTGCAGTCGGAGCAGCGAAAGGGCTTGCCTTCCTCCATGAAGAAGAAAAACCAGTCATA TATCGTGATTTTAAGGCTTCAAATGTCTTGTTAGACTCGGACTATAATGCAAAGCTTTCAGATTTTGGCCTGGCAACGGATGGTCCTGAAGGAGATCGCA CACACATTACAACGCCTGTTATGGGAACTGAAGGCTATGCTGCTCCGGAATACATAATGACAGGTCATTTAACAACCATGAGTGATGTATTCAGCTTCGG AGTGGTACTCTTAGAGCTTCTTACTGGTAGACGATCCGTGGACAAGAACCTTCCGAATAGAGAGCAGAACCTAGTAAAGTGGGCAAGACCGCAGTTGAAG GATCCCCGTAAGCTAGAACAAATCATGGACCCAAGACTTGAAGGCCAGTATTCGACCGAGGGTGCGAGAAAGGCAGCAGGATTGGCGTACCAGTGTTTGA GTCACCATTCCAAATCAAGACCAACTATGAGCACTGTTGTCAGGACCTTGGAGCAGTTACTTGACTTAACTGACACTCCAACTGGAACCTTTGTGTATAT TGTTCCAACTGAAGGCAAAATCCTTGGTGGTGTAGAAAAGAAGGGAAACGAAGGCAAAAATGAATGTGACGAGATCAAAAACGGAAACAAATGTGAAGGA AAGGAGGTGGGGATTAAAGAGAAGGGCCGTGAACAAAACCAAAGAGGTCGCCGGCACAGACGTAGGGCGAAGTCATTGAGGTATAGAGCTGTGCATTCTG ATACAGCTTTGTATAAAACCTTAGGAACTGGTTTGTACTTTCCCAGGAACTAG
AA sequence Show only first row Show all	>Potri.001G168000.1 pacid=42792426 polypeptide=Potri.001G168000.1.p locus=Potri.001G168000 ID=Potri.001G168000.1.v4.1 annot-version=v4.1 MVLKKFTWKSILPGCLKSESSSYPEPKQICSQRLSISDFSNPGSPISFSDLSSSIFNLHVFALKELRTITHEFSKSNYLGEGGFGAVYKGFIDDKLRPGL KAQPVAVKALDPDGSQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYVERGNLEDKLFYRYSAALPWLTRLKIAVGAAKGLAFLHEEEKPVI YRDFKASNVLLDSDYNAKLSDFGLATDGPEGDRTHITTPVMGTEGYAAPEYIMTGHLTTMSDVFSFGVVLLELLTGRRSVDKNLPNREQNLVKWARPQLK DPRKLEQIMDPRLEGQYSTEGARKAAGLAYQCLSHHSKSRPTMSTVVRTLEQLLDLTDTPTGTFVYIVPTEGKILGGVEKKGNEGKNECDEIKNGNKCEG KEVGIKEKGREQNQRGRRHRRRAKSLRYRAVHSDTALYKTLGTGLYFPRN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.001G168000 [exp]	0	1
AT2G47890	CO	COL13	B-box type zinc finger protein...		Potri.014G134601 [exp]	2.44	0.9634
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	3.31	0.9693
AT3G50770		CML41	calmodulin-like 41 (.1)		Potri.005G128100 [exp]	3.46	0.9620
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	4.69	0.9655
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127101 [exp]	6.32	0.9567
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127000 [exp]	8.36	0.9552
AT5G49040			Disease resistance-responsive ...		Potri.006G195300 [exp]	9.05	0.9080
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028600 [exp]	9.53	0.9583
AT3G08870			Concanavalin A-like lectin pro...		Potri.006G103200 [exp]	10.77	0.9362
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.003G169100 [exp]	11.31	0.9453

Compare expression of checked genes

Potri.001G168000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.