Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSD.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72560 1420 / 0 PSD PAUSED, ARM repeat superfamily protein (.1.2.3) AT3G03110 45 / 0.0003 CRM1B, XPO1B exportin 1B (.1) AT5G17020 45 / 0.0003 HIT2, ATXPO1, ATCRM1, XPO1A HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066200 [exp] 1745 / 0 AT1G72560 1451 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037671 [exp] 1488 / 0 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Lus10015655 [exp] 872 / 0 AT1G72560 838 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Lus10009572 [exp] 45 / 0.0003 AT5G17020 1860 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10020393 [exp] 44 / 0.0007 AT5G17020 1878 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08389 [poplar] [flax] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Potri.001G168100.1 pacid=42789996 polypeptide=Potri.001G168100.1.p locus=Potri.001G168100 ID=Potri.001G168100.1.v4.1 annot-version=v4.1 ATGGATGATGTTGAAAAAGCAATACTTATAAGTTTTGATGAATCGGGAGCTATAGATTCAGCCCTAAAATCACAAGCAGTCTCTTTCTGTCAGCAAATTA AGGAAACCCCAACTGTATGCCGCCTTTGCATTGAGAAGTTGTGTTTTTGCAGGCTTGTTCAGGTTCAGTTTTGGTGTTTACAGACTTTACATGAGCTTGT TAGGGTTAAGTATGCTCTGTTGAGTTTACAAGAGAAGGATTTCATGAGGAAATCCGTGTTTTCTATGTGCTGTTTTGAGGCTATTGATGATCACAATAAT AATGCTGTAAGGATTTTAGAGGGCGGTCCTGCATTTATAAAGAATAAGCTTGCTCAGGTTTTTGTTGCTTTGGTTTATTTTGAGTACCCTTTAACTTGGT CTTCGGTGTTTGTTGATTTTTTGCCTCATTTGAGAAAAGGGGCGGTGGTTATTGATATGTTCTGTAGGATTTTGAATGCTTTGGATGATGAATTGATTAG TTTAGATTTCCCACGGACATCTGAGGAGATGGGGGTTGCAGGGCGGGTTAAGGATGCTATGAGGCAGCAATGCATAACACAAATAGTGACTTTTTGGTAT GACGTTGTATCTATGTATTGGAATTCTGATCCGGACCTTTGTTCTGGTGTGTTAGATTCGATGAGGAGGTATATTTCATGGATTGATATTGGGTTGATTG TGAATGATCTATTTATTCCATTATTATTTCAGCTGATTTTAGTTGATGGGGGATCTGATCAGCTTCAAGGTGCTGCTGCTGGGTGTGTTTTGGCTGTGGT TTCCAAGCGGATGGATCACCAATCGAAGTTATCAATATTGCAAAGTCTTCAGATAAATAGGGTTTTTGGGTTGGTAACTGGAGATGGTGACTCGGAGTTG GTATCAAAAGTAGCTACATTAATTACCGGGTATGCTGCTGAGGTTTTACAGTGCTATAAATGGGTGAATACAGACGATGCTAAGGGTGTTTCTCTTGAGC TTTTGAATGAAGTTTTGCCATCTGTTTTTTATGCAATGCGAAACTTTGAGGTGGGCACCACATTTAGTATTGTGCAATTCCTTTCGTGTTATGTTGCCAC TATGAAGAGCCTTTCTCCATTGAGGGAGAAACAACTGCGTCAAGTGGGTCAGATATTGGAAGTGATATGTGCACGAATTCGTTATGATCCTATCTACCGT GATAATCTTGATATGCTGGATAAGATTGGGAGAGAGGAGGAAGAAAGGATGGCGGAATCTAGAAAGGATCTATTCTTGTTGTTGCGTAGTGTGGGTCGTG TGGCCCCAGATGTTACTCAAATATTTATCAGAAATTCTTTAGCCAGTTCTATCTCATCCATGTCAGAAAGAAATGTTGAAGAGGTGGAAGCTTCTCTTTC TCTTTTGCATGCACTTGGAGAGTCATTGAGTGATGATGCCATAAAAACTGGAAGTGGACTGTTGCATGAATTGGTGCCAAACCTCCTCTCGACAAGGTTT CCGTGTCATTCTAACAGGTTAGTTGCACTTGTGTATTTGGAGACTATAACTAGATATATGAAGTTTGTTCAGGAGAATACCCGTTATGTCCCCGTGGTTT TGGCTGCATTTCTGGATGAGAGAGGAATACACCACCCAAACTTCCATGTGAGTCGTAGAGCTAGTTATCTGTTCATGAGGGTTGTGAGGTTGCTGAAAGC AAAGCTTGTGCCTTTCATAGAGAAAATTTTGCAGAGCCTCCAAGATACAGTAGCCAGGTTTACAACTATGAATCATTTATCGAATGAATTTTCAGGATCT GAGGATGGTATCCACATCTTTGAGGCAATTGGTCTATTAATTGGGATGGAAGATCTACCGCCGGAAAAGCAATCTGATTATCTATCTTCGTTGCTCACTC CTCTTTGTCATCAGGTGGAGGCATTACTCATAAATGCCAATGTACTGAACCCAGAAGAATCTCCAGTGAAAATTGCTAATATTCAGCAAATAATCATGGC AATTAATGCCCTCAGCAAGGGCTTTAGTGAGCGCCTGGTAACCACGAGTCGCCCTGCAATAGGAGTCATGTTTAAGAAGACATTGGACATTCTCCTCCAA ATACTTGTTGTATTTCCAAAGATAGAGCCTTTACGGAATAAGGTTACATCCTTCATTCATCGTATGGTAGATACTTTAGGAGCATCTGTATTTCCTTGCC TTCCAAAGGCATTGGGACAATTGCTTGCAGAAAGTGAGCCAAAGGAAATGGTTGGGTTTCTTGTTCTGCTCAATCAGCTTATATGCAAATTCAACACCTC GATGCATCACATAGTGGAGGAAGTTTTTCCAGCTATTGCTAGTAGAATCTTTAGGATAGTCTCAACTAAAGAATTGCCTTCAGGAGATGGAATCAGTTCT GAGGAAATTCGTGAATTACAAGAACTCCAGAAAACATTTTACACATTTCTTCATGTGATAACCACACACGATCTATCTTCAGTCTTCCTTTCAACCAAGA GTAGGGGCTACTTGGATAAAATGATGCATTTGCTACTGCACTCAGCATGCAATCACAAGGATATTCTTGTGAGAAAGGCGTGCGTGCAGATATTCATTAG GTTAATTAAAGACTGGTGTACAAGGCCTTATGGTGAAGAAAAGGTACCTGGTTTCCAAAGGTTTATAATCGATGGCTTTGCGATGAACTGTTGTTTTGAC AGCGCGCTTGACAAATCCTTTGAGTTCCATGATGCAAATACTCTCATTCTGTTTGGAGAAATTGTACTTGCTCAGAAGGTTATGTACGAGAAGTTTGGTG ATGATTTTCTTGCTCATTTTGTAACAAAATGCTTTACTTCTGCACATTGCCCTCAAGATTTAGCTTCACAATATTGCCAAAAGTTGCAGGGTAATGATAT GAAGGCATTGAGATCATTCTACCAGTCACACATCGAGAATTTACGATTTCAACAGAATGGAAGCCTAGTTTTCAAATAG
AA sequence Show only first row Show all	>Potri.001G168100.1 pacid=42789996 polypeptide=Potri.001G168100.1.p locus=Potri.001G168100 ID=Potri.001G168100.1.v4.1 annot-version=v4.1 MDDVEKAILISFDESGAIDSALKSQAVSFCQQIKETPTVCRLCIEKLCFCRLVQVQFWCLQTLHELVRVKYALLSLQEKDFMRKSVFSMCCFEAIDDHNN NAVRILEGGPAFIKNKLAQVFVALVYFEYPLTWSSVFVDFLPHLRKGAVVIDMFCRILNALDDELISLDFPRTSEEMGVAGRVKDAMRQQCITQIVTFWY DVVSMYWNSDPDLCSGVLDSMRRYISWIDIGLIVNDLFIPLLFQLILVDGGSDQLQGAAAGCVLAVVSKRMDHQSKLSILQSLQINRVFGLVTGDGDSEL VSKVATLITGYAAEVLQCYKWVNTDDAKGVSLELLNEVLPSVFYAMRNFEVGTTFSIVQFLSCYVATMKSLSPLREKQLRQVGQILEVICARIRYDPIYR DNLDMLDKIGREEEERMAESRKDLFLLLRSVGRVAPDVTQIFIRNSLASSISSMSERNVEEVEASLSLLHALGESLSDDAIKTGSGLLHELVPNLLSTRF PCHSNRLVALVYLETITRYMKFVQENTRYVPVVLAAFLDERGIHHPNFHVSRRASYLFMRVVRLLKAKLVPFIEKILQSLQDTVARFTTMNHLSNEFSGS EDGIHIFEAIGLLIGMEDLPPEKQSDYLSSLLTPLCHQVEALLINANVLNPEESPVKIANIQQIIMAINALSKGFSERLVTTSRPAIGVMFKKTLDILLQ ILVVFPKIEPLRNKVTSFIHRMVDTLGASVFPCLPKALGQLLAESEPKEMVGFLVLLNQLICKFNTSMHHIVEEVFPAIASRIFRIVSTKELPSGDGISS EEIRELQELQKTFYTFLHVITTHDLSSVFLSTKSRGYLDKMMHLLLHSACNHKDILVRKACVQIFIRLIKDWCTRPYGEEKVPGFQRFIIDGFAMNCCFD SALDKSFEFHDANTLILFGEIVLAQKVMYEKFGDDFLAHFVTKCFTSAHCPQDLASQYCQKLQGNDMKALRSFYQSHIENLRFQQNGSLVFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Potri.001G168100 [exp]	0	1	PSD.1
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Potri.007G128300 [exp]	18.38	0.6288
AT5G58100			unknown protein		Potri.018G150600 [exp]	24.85	0.6210
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.003G100600 [exp]	36.16	0.5774
					Potri.001G060300 [exp]	45.49	0.5482
					Potri.004G200600 [exp]	79.42	0.5338
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	82.04	0.5349
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	83.33	0.5448
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Potri.001G234800 [exp]	89.44	0.5005
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	119.36	0.5221	Pt-XPO1.1

Compare expression of checked genes

Potri.001G168100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.