Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RSH2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54130 950 / 0 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 933 / 0 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 218 / 1e-60 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT3G17470 144 / 3e-36 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066000 [exp] 1295 / 0 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 226 / 5e-63 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.013G089000 [exp] 173 / 5e-45 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 142 / 2e-35 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001862 [exp] 1026 / 0 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 969 / 0 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 963 / 0 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10022102 [exp] 860 / 0 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 195 / 3e-54 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10002139 [exp] 154 / 2e-38 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10028191 [exp] 127 / 1e-30 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 96 / 2e-20 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10011252 [exp] 89 / 5e-20 AT1G54130 87 / 5e-20 RELA/SPOT homolog 3 (.1) Lus10008755 [exp] 68 / 9e-12 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [poplar] [flax] HD_PDEase PF01966 [poplar] [flax] HD HD domain CL0260 [poplar] [flax] NTP_transf PF04607 [poplar] [flax] RelA_SpoT Region found in RelA / SpoT proteins
Representative CDS sequence Show only first row Show all	>Potri.001G168200.1 pacid=42790739 polypeptide=Potri.001G168200.1.p locus=Potri.001G168200 ID=Potri.001G168200.1.v4.1 annot-version=v4.1 ATGGCAGTCCCAACAATAGCTTTATACGCGAGCCCACCTAGTAGCGTGTGTTCAACACCATATCCATGCCAAATCAACGCACACGCAAATTATGATTTTG AATTGAATTCAAGATCTTCATCAACAGCTTCGTCTAGTGCATCTTCCTCTCAGAAACCAATTGTTGGTGGTTTATCTCGTTTGTTTTCATCCCCAGCAGT GAAACATGCATCATTTTCGGGTGATAGAGAGGAGCTGGGGTGGCATGATAGAGGAGACGAATTGAAGGAATTGAGTAGTTCATTTTGCTACACACCAAGT AAATGCCTTGCTGGGTCTTCTATAAAGAGGGATCAAAGTCCGGTTTCGGTTCTGCAAGGTCAAGTCTCTTGTTCTAGTAGTCCTCCTACGAGGATTGCTA GAGAAAGGAGTGGTTGTGATGTGGGTTTTCAGAGTTCAATTCATGGGTCGTTTCGCAGTGGGGCTAATGGGCTCTTTAATGGGTTTGTGAGGAATGCATT AGGGTCTTGTGTTGATTATGATTCTCCGAGTTTTGAGGTTCACAATAATGGTATTGATGAAGATTCATCTTCTGTTGTTGTGGATGAATTGACTTTTAGT ATGGAGGATAGTTGTGTGGACGCTAATTATGAGCCTTATGCTAAGGAGCTGTTGTTTGGCGCACAATCAAGGCACACAATTTTTTGTGATGATTTTGTGA TCAAGGCTTTTCATGAGGCTGAGAAAGCACATAGGGGACAGATGCGAGCCAGTGGGGATCCTTATTTGCAGCATTGTGTAGAGACTGCAGTTCTGCTTGC GATCATTGGTGCCAATTCCACAGTGGTTGCTGCAGGGCTTTTACATGACACTTTGGATGATTCTTTCATAAGCTATGACCACATATTTAAAACATTTGGA GCTGGGGTGGCTGATTTGGTTGAAGGGGTCTCTAAGCTTAGCCAACTGAGCAAGCTTGCTCGTGAGAACAATACAGCAAGCAAAACTGTCGAGGCAGATC GCTTGCACACCATGTTCCTTGCCATGGCAGATGCTAGGGCTGTCCTGATTAAATTAGCTGATCGATTGCATAATATGATGACGCTAGATGCATTGCCTTT GGTGAAGCAACAGAGATTTGCTAAAGAGACTTCGGAGATATTTGCTCCCTTGGCCAACCGTTTAGGAATCTCCAGTTGGAAAGAGCAGTTGGAAAATCTT TGTTTTAAGCATCTCAACCCAGATCAGCACAAAGATTTGTCTGCTAGACTTGTGGACTCTTTTGATGAGGCAATGATTGCTTCTGCTAAAGAGAAATTAG AGAAAGCTCTTACGGATGAAGCCATTTCTTACGATCTATCTGGAAGGCATAAAAGCTTATATAGCACTTATTGCAAAATGTTGAAGAAAAAGCTGAACAT GGATCAGATCCATGATATTCATGGGTTGCGTCTGATTGTCGAAAATAACGAAGACTGCTATAGAGCATTGAGAGTTGTTCAGCGTTTATGGTCCGAAGTA CCTGGAAAATTCAAAGACTATATAAATAATCCGAAGTTCAATGGGTATCGATCTCTTCATACAGTAGTAATGGGTGAGGGCACAGTGCCACTTGAAGTTC AGATTCGAACAAGGGAGATGCATCTGCAAGCAGAGTTTGGATTTGCAGCTCATTGGAGGTACAAGGAAGGTGATAGCAAGCACTCCTCATTTGTGCTTCA GATGGTTGAGTGGGCAAGATGGGTCATAACCTGGCAGTGCGAGACAATGAGCAAAGATCATTCTTTCATTGGCTGTGGTGATTCCATAAAGCCTCCATGC ACATTCCCTTCACATTCTGATGGCTGCCCATATTCTTACAAGCCTCACTGTGGGCAAGATGGACCTGTCTTCGTCATTATGATTGAGAGTGATAAGATGT CTGTGCAAGAGTTTCCTGCAAACTCAACAGTGATGGATCTGCTGGAAAGGGCTGGGCGTACGAGTTCAAGATGGTCCCCATATGGGTTTCCCGTGAAGGA AGAGTTGAGGCCAAGGCTGAACCATCGGCCAGTGTATGATGTGACTTGCAAGCTAAAGATGGGGGATGTCGTGGAGCTAACTCCAGCTATACCTGACAAA TCTTTGTCCGACTACAGGGAAGAGATTCAGCGCATGTATGAACGTGGCTCAGCCCCTGTTTCAAGCACAGTTCCTGCTGTTAGCGGCACTGTTGGATAG
AA sequence Show only first row Show all	>Potri.001G168200.1 pacid=42790739 polypeptide=Potri.001G168200.1.p locus=Potri.001G168200 ID=Potri.001G168200.1.v4.1 annot-version=v4.1 MAVPTIALYASPPSSVCSTPYPCQINAHANYDFELNSRSSSTASSSASSSQKPIVGGLSRLFSSPAVKHASFSGDREELGWHDRGDELKELSSSFCYTPS KCLAGSSIKRDQSPVSVLQGQVSCSSSPPTRIARERSGCDVGFQSSIHGSFRSGANGLFNGFVRNALGSCVDYDSPSFEVHNNGIDEDSSSVVVDELTFS MEDSCVDANYEPYAKELLFGAQSRHTIFCDDFVIKAFHEAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDTLDDSFISYDHIFKTFG AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLVKQQRFAKETSEIFAPLANRLGISSWKEQLENL CFKHLNPDQHKDLSARLVDSFDEAMIASAKEKLEKALTDEAISYDLSGRHKSLYSTYCKMLKKKLNMDQIHDIHGLRLIVENNEDCYRALRVVQRLWSEV PGKFKDYINNPKFNGYRSLHTVVMGEGTVPLEVQIRTREMHLQAEFGFAAHWRYKEGDSKHSSFVLQMVEWARWVITWQCETMSKDHSFIGCGDSIKPPC TFPSHSDGCPYSYKPHCGQDGPVFVIMIESDKMSVQEFPANSTVMDLLERAGRTSSRWSPYGFPVKEELRPRLNHRPVYDVTCKLKMGDVVELTPAIPDK SLSDYREEIQRMYERGSAPVSSTVPAVSGTVG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	0	1	Pt-RSH2.3
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	1.73	0.9300
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	3.87	0.9096
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	4.00	0.9137	PDS1.2
AT3G22750			Protein kinase superfamily pro...		Potri.005G213200 [exp]	4.24	0.8988
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.006G203200 [exp]	6.24	0.8851
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.011G142700 [exp]	6.32	0.9004
AT3G54680			proteophosphoglycan-related (....		Potri.013G120700 [exp]	9.16	0.8954
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	9.59	0.9036
AT1G32740			SBP (S-ribonuclease binding pr...		Potri.003G085800 [exp]	10.77	0.8638
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	10.90	0.8792

Compare expression of checked genes

Potri.001G168200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.