Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TAFII21.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54140 263 / 7e-91 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011251 [exp] 258 / 6e-89 AT1G54140 242 / 2e-82 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1) Lus10012411 [exp] 255 / 6e-88 AT1G54140 239 / 2e-81 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1) Lus10022103 [exp] 120 / 3e-36 AT1G54140 112 / 2e-33 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1) Lus10001863 [exp] 110 / 3e-32 AT1G54140 106 / 7e-31 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF15630 [poplar] [flax] CENP-S CENP-S protein
Representative CDS sequence Show only first row Show all	>Potri.001G168300.2 pacid=42791060 polypeptide=Potri.001G168300.2.p locus=Potri.001G168300 ID=Potri.001G168300.2.v4.1 annot-version=v4.1 ATGGCGGAGGGAGAAGAAGACATGCCAAGGGATGCCAAGATTGTGAAATCATTGCTTAAATCAATGGGTGTCGAGGATTATGAACCTCGTGTTGTGCATC AGTTTTTGGAGTTGTGGTATCGTTATGTTGTTGATGTGTTGACAGATGCACAGGTTTATTCAGAGCATGCTAACAAAACTGCAATTGACTGTGATGATGT CAAGCTTGCTATTCAATCTAAAGTCAATTTCAGCTTCTCGCAACCCCCACCTAGAGAGGTTTTACTAGAGTTGGCCAGAAATAGGAACAAAATCCCATTG CCTAAGTCAATAGCTGGGCCTGGTATCCCTCTTCCACCCGAGCAGGACACGTTGATCAGTCCAAACTATCAACTTGCTATCCCAAAGAAGCGGACGGCCC AGGCAATAGAAGAGACAGAGGAGGATGAAGAGAGTGCTGATCCCAACCAATCACAAGAACAGAAGACGGATCCTCCACAGCTTACTCCTCAAAGAGTATC CTTTCCTCTCACCAAACGTCCCAAGTGA
AA sequence Show only first row Show all	>Potri.001G168300.2 pacid=42791060 polypeptide=Potri.001G168300.2.p locus=Potri.001G168300 ID=Potri.001G168300.2.v4.1 annot-version=v4.1 MAEGEEDMPRDAKIVKSLLKSMGVEDYEPRVVHQFLELWYRYVVDVLTDAQVYSEHANKTAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPL PKSIAGPGIPLPPEQDTLISPNYQLAIPKKRTAQAIEETEEDEESADPNQSQEQKTDPPQLTPQRVSFPLTKRPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Potri.001G168300 [exp]	0	1	Pt-TAFII21.2
AT2G24940		ATMAPR2	membrane-associated progestero...		Potri.018G016900 [exp]	6.48	0.6176
AT5G03460			unknown protein		Potri.006G122600 [exp]	16.97	0.5707
AT2G34520		RPS14	mitochondrial ribosomal protei...		Potri.001G424950 [exp]	19.67	0.5718
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Potri.006G122700 [exp]	21.26	0.5901
AT3G43520			Transmembrane proteins 14C (.1...		Potri.006G217400 [exp]	24.28	0.5410
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Potri.017G068100 [exp]	35.32	0.5324
AT2G46390		SDH8	succinate dehydrogenase 8, unk...		Potri.014G095901 [exp]	44.54	0.5579
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	49.52	0.5359
AT5G60390			GTP binding Elongation factor ...		Potri.006G130900 [exp]	55.72	0.5216
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	59.74	0.5302	RHC1.2

Compare expression of checked genes

Potri.001G168300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.