Plant FIBer expression Database

Potri.001G168400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G065900
[exp]
165 / 8e-54 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037674
[exp]
103 / 2e-29 ND /
Lus10015658
[exp]
54 / 1e-10 ND /
PFAM info
Representative CDS sequence
>Potri.001G168400.1 pacid=42789812 polypeptide=Potri.001G168400.1.p locus=Potri.001G168400 ID=Potri.001G168400.1.v4.1 annot-version=v4.1
ATGGCCACATATGCCTACAGTGCTGCCAGCCGAAACTCATCACAAAGAGCATTAGCCATGGTGTTGGCTCTCGCATCAGCTGTGGTGCTATCACCATTGT
ATGTTAAGCGAAAGAACGACCATACGGGTTATTTTAATCATGAGACAAAATGGAGCTCTGGCTTTGTTCTTCCAATGGTGCTTGCTGGGCTAATAATTGC
TATTAGGACAACTTCCTCTTCCATGTCAGTCCATAGAGGTGCTGCGGCTTCGTTCATTCCGTCTCCAGATCCCTCTTGGGTGCTTAGAATTGGGAGCTCT
TCTTGGGGACTTGCTGGAGTGTTAGTGATGCTTGTGCTTGTGCTATCATGGCAAGACTCGGTTCAAGAATTCTTCTGGAGATAA
AA sequence
>Potri.001G168400.1 pacid=42789812 polypeptide=Potri.001G168400.1.p locus=Potri.001G168400 ID=Potri.001G168400.1.v4.1 annot-version=v4.1
MATYAYSAASRNSSQRALAMVLALASAVVLSPLYVKRKNDHTGYFNHETKWSSGFVLPMVLAGLIIAIRTTSSSMSVHRGAAASFIPSPDPSWVLRIGSS
SWGLAGVLVMLVLVLSWQDSVQEFFWR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G168400
[exp]
0 1
AT1G11440 unknown protein Potri.004G029500
[exp]
3.16 0.7878
AT5G17640 Protein of unknown function (D... Potri.013G071000
[exp]
5.29 0.7774
AT3G25930 Adenine nucleotide alpha hydro... Potri.010G123300
[exp]
6.92 0.7916
Potri.003G065900
[exp]
7.74 0.7344
AT1G20560 AAE1 acyl activating enzyme 1 (.1.2... Potri.002G010600
[exp]
9.48 0.7716
AT3G61250 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb d... Potri.014G081200
[exp]
14.83 0.7658
AT5G36930 Disease resistance protein (TI... Potri.005G004500
[exp]
16.97 0.6683
AT3G63530 BB2, BB BIG BROTHER, RING/U-box superf... Potri.001G019600
[exp]
17.60 0.7086
AT1G15170 MATE efflux family protein (.1... Potri.008G126500
[exp]
17.86 0.7637
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.016G120532
[exp]
17.88 0.7221

Potri.001G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.