Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 279 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 190 / 6e-58 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 190 / 7e-58 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 181 / 1e-54 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 175 / 4e-52 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 165 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 143 / 4e-40 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 51 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219400 [exp] 201 / 2e-62 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 193 / 4e-59 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 192 / 7e-59 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 191 / 2e-58 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 182 / 6e-55 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 149 / 3e-42 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 148 / 6e-42 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 147 / 4e-41 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 142 / 1e-39 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019631 [exp] 286 / 4e-95 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 282 / 2e-93 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 249 / 5e-81 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 198 / 4e-61 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 184 / 2e-55 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 179 / 1e-53 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 169 / 6e-50 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 162 / 5e-47 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 108 / 4e-27 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 102 / 1e-25 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G168600.1 pacid=42793353 polypeptide=Potri.001G168600.1.p locus=Potri.001G168600 ID=Potri.001G168600.1.v4.1 annot-version=v4.1 ATGGACTCGACCAAGCTTTTGCACCCTTTCACCTTCTATCTCTCCACCGCGGTGGCCATTTTTCGGTACCTCCAAACCGGTTTCTTTTGCCTGAAACGGA TTCCGATCTTTTTCACCATAGTTGATACAGTGATTTCATTGTACTTCAGGTTATGTGGCCTTTCACCTTTCACCATTGATTTAGACGATCAAACCACGAT GCATTTTTGGACCTCCAATCATAGGAGGTTCAACAAACCTAATCTAGTCATGATCCATGGCTATGGTGGTGATGCGCGGTGGCAATTTGTCTATCAAGTG CGTTCTCTGTCGCAAAACTTTAATTTGTATGTTCCAGATTTATTGTTTTTCGGCAAGTCTTCTTCGAAGAGATCAGGCCGAACTGATACTTTTCAAGCAA GGTGTTTGGCTGAATGTTTGAAAAGATTGGGCGTAGACAGGTTCTCTGTGTACTCAATTAGCTATGGAGGGTTTGTGGCATATCGGATTGCTGAAATTTT TCCAGAGGAGGTGGAGAAGGTCGTGATTGTGAGTAGTGGGGTAGTTTCCAGTGATGATCAGATAGAGGAGCAGATCAAGAAAATTGGAAGAGATCCAGCA GCGATACTTTTGCCTGAACATCCACAAGATCTAAGGTTCTTAGTGAACCTATCAGTATACAAGTGCAAGCCCTTGAGGTGGCTTCCTGATATATTCCTTC AGGAGTTTATCAATGCAATGGTTAATCATCAGAGAAAGGAAAAATTAGAGCTACTGGAGCACTTGCTGGCCAAAAAAGCTGATATAAGCCTTCCCATTCT AACACAGGAAACACTGCTAATATGGGGTGATCAGGATAATGTGTTCCCAGTAAACTTGGCCTATCAATTGCAGAGGCATCTGGGACCAAAATCAAGGGTA AAGATAATCAAGGATATAGGCCATGCGGCCAATATAGAGTCGCCCGATGCTGTGAATGATCTGATAACATCATTTGTTTTGGGTCGATCCAAATGGGATA TCCCATCAGTTTCTGAAAAATCCAGTCTCAGTCAAGTGTATTAG
AA sequence Show only first row Show all	>Potri.001G168600.1 pacid=42793353 polypeptide=Potri.001G168600.1.p locus=Potri.001G168600 ID=Potri.001G168600.1.v4.1 annot-version=v4.1 MDSTKLLHPFTFYLSTAVAIFRYLQTGFFCLKRIPIFFTIVDTVISLYFRLCGLSPFTIDLDDQTTMHFWTSNHRRFNKPNLVMIHGYGGDARWQFVYQV RSLSQNFNLYVPDLLFFGKSSSKRSGRTDTFQARCLAECLKRLGVDRFSVYSISYGGFVAYRIAEIFPEEVEKVVIVSSGVVSSDDQIEEQIKKIGRDPA AILLPEHPQDLRFLVNLSVYKCKPLRWLPDIFLQEFINAMVNHQRKEKLELLEHLLAKKADISLPILTQETLLIWGDQDNVFPVNLAYQLQRHLGPKSRV KIIKDIGHAANIESPDAVNDLITSFVLGRSKWDIPSVSEKSSLSQVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17430			alpha/beta-Hydrolases superfam...		Potri.001G168600 [exp]	0	1
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111800 [exp]	1.00	0.9288
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	3.74	0.9264
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	4.89	0.9145
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	5.29	0.9066
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	5.47	0.8996
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G031901 [exp]	5.47	0.8850
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.002G037100 [exp]	5.74	0.8844
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	6.32	0.9019
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	7.93	0.8905	COMTL3,Pt-GSI.2
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Potri.008G136600 [exp]	8.06	0.8721

Compare expression of checked genes

Potri.001G168600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.