Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) AT1G59560 76 / 7e-15 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT4G24204 63 / 1e-11 RING/U-box superfamily protein (.1.2.3) AT1G63900 61 / 5e-10 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT5G19080 52 / 5e-07 RING/U-box superfamily protein (.1) AT3G06140 50 / 1e-06 RING/U-box superfamily protein (.1) AT2G38195 47 / 1e-05 RING/U-box superfamily protein (.1.2) AT2G38185 47 / 2e-05 RING/U-box superfamily protein (.1.2.3.4) AT5G23110 47 / 2e-05 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G09770 45 / 4e-05 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065500 [exp] 595 / 0 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1) Potri.014G138000 [exp] 69 / 1e-12 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.014G020900 [exp] 61 / 6e-10 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.007G050500 [exp] 52 / 6e-08 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.005G036400 [exp] 51 / 6e-07 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.001G251900 [exp] 50 / 1e-06 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 49 / 3e-06 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.003G085800 [exp] 48 / 7e-06 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.013G025400 [exp] 47 / 1e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000533 [exp] 379 / 3e-130 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10027994 [exp] 64 / 5e-11 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10008163 [exp] 63 / 1e-10 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10010392 [exp] 53 / 6e-08 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10034030 [exp] 50 / 2e-06 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10004419 [exp] 49 / 4e-06 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10041300 [exp] 48 / 7e-06 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 48 / 8e-06 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10002487 [exp] 48 / 9e-06 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10003551 [exp] 45 / 3e-05 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12483 [poplar] [flax] GIDE E3 Ubiquitin ligase CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.001G168700.1 pacid=42790214 polypeptide=Potri.001G168700.1.p locus=Potri.001G168700 ID=Potri.001G168700.1.v4.1 annot-version=v4.1 ATGTCATCACGTTCCCATGAGCAAGCACTGGCCGCCCTGCTATCCCAACTTGCTCTCTCCTTCGACGGAGCAATTCTCGGGGCAGCTCTTGCCTACGCCG CCGTACGTGCAATTCTCAATTACACTGCAAATTCCAAATCCCTTGCCAAAATCAGCAAGGCACCCACTCTTTCCGTCTCCGACCTCCGATCGCTCCTTCA AAATCACGATCAAGACCACCAGGACCATGAGCATAACCTCGTAATTGTCAAAGGAATCGTTGAGGCTAAATCAGCCGTTGAATGGACATGGAAGGAGAGC TTTAGACCCCCTAAGGTCTTGCTTTCTCATAATTCTGCTTATAAGGCGGTTATTCTTCAAAAAACTCAAACTTGTATATACAACGAATGGAAGGGCTTTT TAGGATGGACTTCCGAGTTGCGGGCTATCTTTGGCAGATCTTTGAAAGAACAAGAAACAACCTTATTAAGAACGGTTCCTTTTATACTAGTTGAAGGTGC TCAATGGCCACGGTCTGATTATGTTATCGTGAACATGGTCGGATCAGCACACCCCCTACCTCTTACAACTGTTTATCATCAGTTGCAACGCATTGCTGCT TCTCGTTATACATTCATTCAGGCACTTTTTGGTCATGAATACCCTGTTGGGGTGCTTCACGAGGAGAAAATCCTGCCATTAGGGAAGTGTATCAGTGCTG TTGGCATTTGCAATTCTAAAAAAGGAATTCCTGAGATAAAATCTTGCAAGGATCTTCCCTATTTTCTGGCTGACATTACCAAAGATCAAATGGTGGCAGA TCTTGCCTTCAAGGCGAAAATACAGCTATGGAGTGGTATTGTTCTTGGTTCACTTTCAATTGGGGTCCTTGGCTTCGCTGTTATGAGGAACTGGAATAAA TGGCAAGCGTGGAGGCAAAGACACTCTCACCTGCCGAACCATACTACCATTGATGCAGATGTCTCTCGGATTGATGAAGATGAAGCAGGAGATGTGCCAG ATGGACAGTTGTGTGTGATCTGCTTAACGAGGAGAAGGCGATCTGCATTCATTCCCTGTGGGCATCTTGCATGCTGTCATTTCTGTGCTATATCAGTTGA AAGTGAGGTATCCCCCAAATGCCCTCTCTGTAGGCAGGCAATCCGAAATTCTATCAGGGTTTTTGAATGTTGA
AA sequence Show only first row Show all	>Potri.001G168700.1 pacid=42790214 polypeptide=Potri.001G168700.1.p locus=Potri.001G168700 ID=Potri.001G168700.1.v4.1 annot-version=v4.1 MSSRSHEQALAALLSQLALSFDGAILGAALAYAAVRAILNYTANSKSLAKISKAPTLSVSDLRSLLQNHDQDHQDHEHNLVIVKGIVEAKSAVEWTWKES FRPPKVLLSHNSAYKAVILQKTQTCIYNEWKGFLGWTSELRAIFGRSLKEQETTLLRTVPFILVEGAQWPRSDYVIVNMVGSAHPLPLTTVYHQLQRIAA SRYTFIQALFGHEYPVGVLHEEKILPLGKCISAVGICNSKKGIPEIKSCKDLPYFLADITKDQMVADLAFKAKIQLWSGIVLGSLSIGVLGFAVMRNWNK WQAWRQRHSHLPNHTTIDADVSRIDEDEAGDVPDGQLCVICLTRRRRSAFIPCGHLACCHFCAISVESEVSPKCPLCRQAIRNSIRVFEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.001G168700 [exp]	0	1
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	5.47	0.8600
AT3G49055			unknown protein		Potri.015G146100 [exp]	7.21	0.8628
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	7.48	0.8493
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	10.19	0.8448	GL2.2
AT4G17870		RCAR11, PYR1	regulatory component of ABA re...		Potri.001G142500 [exp]	11.61	0.8441
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	18.46	0.8398
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	19.28	0.8521
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	20.04	0.8476
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	23.36	0.8451
					Potri.001G077600 [exp]	26.83	0.8397

Compare expression of checked genes

Potri.001G168700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.