Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72610 241 / 2e-81 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT5G20630 231 / 3e-77 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT3G04200 135 / 1e-39 RmlC-like cupins superfamily protein (.1) AT3G62020 132 / 3e-38 GLP10 germin-like protein 10 (.1.2) AT3G10080 129 / 5e-37 RmlC-like cupins superfamily protein (.1) AT5G26700 128 / 6e-37 RmlC-like cupins superfamily protein (.1) AT5G39160 128 / 7e-37 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 128 / 9e-37 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT1G09560 127 / 2e-36 GLP5 germin-like protein 5 (.1) AT5G39130 127 / 2e-36 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 335 / 1e-118 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 243 / 3e-82 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.011G163800 [exp] 142 / 2e-42 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 140 / 1e-41 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163216 [exp] 139 / 3e-41 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 139 / 3e-41 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162932 [exp] 137 / 1e-40 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 137 / 1e-40 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.014G110400 [exp] 135 / 8e-40 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002795 [exp] 246 / 3e-83 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10010769 [exp] 246 / 4e-83 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10022020 [exp] 244 / 1e-82 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 208 / 3e-68 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 199 / 1e-64 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 192 / 5e-62 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 179 / 9e-57 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 178 / 2e-56 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037665 [exp] 177 / 7e-56 AT1G72610 179 / 1e-56 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037661 [exp] 177 / 7e-56 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.001G169000.3 pacid=42790254 polypeptide=Potri.001G169000.3.p locus=Potri.001G169000 ID=Potri.001G169000.3.v4.1 annot-version=v4.1 ATGCTTCTCTTTGTCTGTCTCTTTGCTCTCCTATTTTCTTCCTCCTCCCATGCAGCTGATTTCTGTGTTGCAAAACTAAAGGGTGCAGGAAATCCTGCAG GGTATGCCTGCAGAATGCCCTCAAAGGTCACAGTCGATGATTTTGTGTTTACTGGCCTTGGCGTTGCTGGTAACACTACCAACATTATCAGTGCTGCCGT GACCCCAGCTTTTGTACAGCAATTTCCCGGTGTAAATGGGCTTGGTCTATCCATGGCTCGACTAGACCTAGCACCAGCTGGTGTTATCCCAATGCACACT CACCCTGGTGCATCCGAAGTATTATTTGTTGTGCAAGGTAAGATCACTGCTGGATTCATCTCCAGCTTGGCGAACACTGTATACGTAAAGACTCTTAAGA AGGGTGATGTTATGGTGTTTCCACGAGGACTGCTTCACTTTCAAATAAATGATGGTGAGATAAATGCAGTCGCTGTTGTTAGCTTCAGTGACCCTGATCC TGGCCTCCAAATCACTGATTTTGCGTTCTTTGCCAATAACTTGTCCTCAGAGTTGTTGGAGAAATCCACTTTTCTTGATGATGCTCAGGTTAAAAAGCTC AAGAAAGTTCTTGGTGGGACTGGCTAG
AA sequence Show only first row Show all	>Potri.001G169000.3 pacid=42790254 polypeptide=Potri.001G169000.3.p locus=Potri.001G169000 ID=Potri.001G169000.3.v4.1 annot-version=v4.1 MLLFVCLFALLFSSSSHAADFCVAKLKGAGNPAGYACRMPSKVTVDDFVFTGLGVAGNTTNIISAAVTPAFVQQFPGVNGLGLSMARLDLAPAGVIPMHT HPGASEVLFVVQGKITAGFISSLANTVYVKTLKKGDVMVFPRGLLHFQINDGEINAVAVVSFSDPDPGLQITDFAFFANNLSSELLEKSTFLDDAQVKKL KKVLGGTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Potri.001G169000 [exp]	0	1
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Potri.002G249901 [exp]	1.41	0.9991
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G165200 [exp]	2.44	0.9976
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Potri.003G065266 [exp]	3.46	0.9991
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Potri.005G153600 [exp]	3.46	0.9989	Pt-CER2.1
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.016G114300 [exp]	5.65	0.9973
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054600 [exp]	12.96	0.9974
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.007G103800 [exp]	15.00	0.9973	GA20ox5
AT2G18420			Gibberellin-regulated family p...		Potri.013G113400 [exp]	16.61	0.9972
AT4G00165			Bifunctional inhibitor/lipid-t...		Potri.014G059800 [exp]	17.32	0.9973
					Potri.011G073116 [exp]	17.54	0.9972

Compare expression of checked genes

Potri.001G169000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.