Plant FIBer expression Database

Potri.001G169900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17440 268 / 9e-81 CKH1, TAF12b, EER4 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
AT3G10070 140 / 3e-35 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G064100
[exp]
363 / 1e-117 AT1G17440 266 / 1e-79 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Potri.006G083500
[exp]
140 / 9e-36 AT3G10070 298 / 3e-95 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006528
[exp]
270 / 6e-83 AT1G17440 280 / 4e-86 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Lus10003250
[exp]
140 / 5e-35 AT3G10070 325 / 8e-105 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1)
Lus10001251
[exp]
126 / 4e-33 AT1G17440 115 / 2e-29 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Lus10035601
[exp]
132 / 1e-31 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF03847 TFIID_20kDa Transcription initiation factor TFIID subunit A
Representative CDS sequence
>Potri.001G169900.4 pacid=42789990 polypeptide=Potri.001G169900.4.p locus=Potri.001G169900 ID=Potri.001G169900.4.v4.1 annot-version=v4.1
ATGGCAGAAAATGCAGCCGCTTCGCCTAAACCTCTCCCTTCTCAGAATACAGTAATAGACCCATCGTCACAAGCAGCAACCTTATTGAACACTAACACGA
CAACCTTAACACAGACACAAACACCAAACGTATCCAATTTACCTCAAAACACACAAATCTCTTCCTCTTCTTCACTTGAACACTCCCAAATCCCTGCTTC
ACCTTCTCTCCCGTCGCAGCAGCAGCAGCAGCAGCAGAATGTCACAGCAATGTCAGGATATCAAATCCAACAAACCCTTCAAAGATCTCCTTCTATGTCG
CGCTTGAGTCAAATTAACCAACAACAACCGAACCAATACGGTGGCGTTTTGAGGCAGCAACAGCAGCAACAACAACAGGGCCTGTATGGGCAGATGAATT
TTGGCGGGTCTGCTTCAATTCAACCGAATTCACAGCAGAATCAACAACTGGGTGGGGCAAATTCGTCTCGCTCAGCACTTCTCGGCCAAACTGGGCACCT
TCCTATGTTGACCGGGACAGCTGCCGCCGCCGCTCAGTTGAACTTGCCCTCACAGTTGCTGGCTTCACCAAGGCAGAAAGCTGGGTTAGTTCAAGGGTCT
CAGTTCCATCCTGGTAATTCTCCGGGGCAGTCTTTGCAGGGGATACAAGCAATGGGAGTGATGGGATCACTAAATATGGGTTCACAAATAAGACCTAATG
GGGCACTCACATATGCTCAACAGCGAATAAATGCAGGGTCAATGAGGCAGCAACCTGTGCAACAAAATCCGCTCACCTCTCAGGTTCAAAGCCTACAAAG
GACACCATCAATGGCATATATGAATCCTCAGATGTCAGGGCTGGCTCAGAATGCACAGCCAACTATGATGCAGAACTCTCTGTCACAGCAACAGTGGTTG
AAGCAAATGCCAACAATATCTGGTTCTGCCTCGCCTTCATTCCATCTTCAACCGAGGCAATCACAGGCTCTCATACAGCAGCAATTGGCTTCATCTGGTC
AACTGCACCAGAATTTGATGGCACAACAGTTATCCCAACTGGTACAGCAGCAGCCCCAAATGGGACACCAACAACTTCATCAGCAGAAGCAGCAACTACT
ACAGCAACAGCAGCAGCAGCTGCAGCTGCAGCTGCAGCAGCAGCAGCAACAATTGCAACAAGTGCCTCTGCATCAGCAGCAGCAACAACATCAACAACAA
CAGCAATCTCCAAGGATGCCAGGACCCACAGGCCAGAAATCTCTTAGTTTGACAGGATCACAGCCAGATGCAACAGCATCTGGTACAACTACACCAGGGG
GGAGTTCAAGCCAAGGAACAGAAGCAACAAATCAACTTCTTGGGAAGAGAAAGATACAAGACTTGGTTTCACAGGTGGATTCACATGGAAAGCTAGATCC
TGATGTTGAAGAACTTTTTCTGGAAATTGCTGACGACTTTATTGATTCTGTGACCACATTTGCTTGCAGTTTGGCTAAGCATCGGAAATCTTCAACTTTA
GAGTCCAAGGATATAATGCTTCACTTAGAGAAAAACTGGCATTTAACCATCCCTGGATTTTCAACGGAAGAGCAGAAGCACCAAAAAAGACCTTTGCCTA
GCGATCTCCACAAGAAGCGTCTTGATATGATTCGTGCATTGATGGAGTCCTCTCAGTCTGAAGGAAATAATATCAATCCTAAAGAGATGTTAAGACAAGG
GCTTGGCAACCCAGTTGTTACCAATCACTTGATAAGACCTTCACCAAGTTCAGAGCAGATGGTTTCACAATCAACTGGTTCTCCAATGGTGCAGCAGATT
ACACGGTTTTAA
AA sequence
>Potri.001G169900.4 pacid=42789990 polypeptide=Potri.001G169900.4.p locus=Potri.001G169900 ID=Potri.001G169900.4.v4.1 annot-version=v4.1
MAENAAASPKPLPSQNTVIDPSSQAATLLNTNTTTLTQTQTPNVSNLPQNTQISSSSSLEHSQIPASPSLPSQQQQQQQNVTAMSGYQIQQTLQRSPSMS
RLSQINQQQPNQYGGVLRQQQQQQQQGLYGQMNFGGSASIQPNSQQNQQLGGANSSRSALLGQTGHLPMLTGTAAAAAQLNLPSQLLASPRQKAGLVQGS
QFHPGNSPGQSLQGIQAMGVMGSLNMGSQIRPNGALTYAQQRINAGSMRQQPVQQNPLTSQVQSLQRTPSMAYMNPQMSGLAQNAQPTMMQNSLSQQQWL
KQMPTISGSASPSFHLQPRQSQALIQQQLASSGQLHQNLMAQQLSQLVQQQPQMGHQQLHQQKQQLLQQQQQQLQLQLQQQQQQLQQVPLHQQQQQHQQQ
QQSPRMPGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSHGKLDPDVEELFLEIADDFIDSVTTFACSLAKHRKSSTL
ESKDIMLHLEKNWHLTIPGFSTEEQKHQKRPLPSDLHKKRLDMIRALMESSQSEGNNINPKEMLRQGLGNPVVTNHLIRPSPSSEQMVSQSTGSPMVQQI
TRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Potri.001G169900
[exp]
0 1
AT1G01930 C2H2ZnF zinc finger protein-related (.... Potri.002G149800
[exp]
1.41 0.9084
AT2G35940 HD BLH1, EDA29 embryo sac development arrest ... Potri.006G203000
[exp]
1.41 0.9171
AT5G13950 unknown protein Potri.002G237800
[exp]
3.00 0.9083
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Potri.003G064100
[exp]
3.31 0.8830
AT2G04880 WRKY ATWRKY1, ZAP1 zinc-dependent activator prote... Potri.014G164300
[exp]
3.46 0.9051
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.011G118800
[exp]
4.24 0.8916
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.005G116400
[exp]
4.89 0.8925
AT5G47040 LON2 lon protease 2 (.1) Potri.003G086000
[exp]
6.92 0.8813 LON.2
AT3G56680 Single-stranded nucleic acid b... Potri.008G021900
[exp]
7.07 0.8831
AT5G52530 dentin sialophosphoprotein-rel... Potri.017G142600
[exp]
7.54 0.8681

Potri.001G169900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.