Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72650 401 / 2e-131 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 330 / 2e-104 MYB TRFL3 TRF-like 3 (.1.2) AT2G37025 100 / 3e-22 TRFL8 TRF-like 8 (.1.2) AT3G53790 64 / 1e-10 MYB TRFL4 TRF-like 4 (.1) AT1G07540 59 / 8e-09 MYB TRFL2 TRF-like 2 (.1) AT3G12560 58 / 2e-08 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G13820 57 / 3e-08 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G46590 57 / 4e-08 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G59430 55 / 2e-07 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT5G58340 54 / 2e-07 MYB myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063700 [exp] 917 / 0 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G126300 [exp] 100 / 6e-22 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.006G086500 [exp] 61 / 1e-09 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.001G241600 [exp] 59 / 6e-09 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.010G202400 [exp] 59 / 1e-08 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 58 / 2e-08 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.009G032000 [exp] 57 / 4e-08 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.006G147400 [exp] 54 / 1e-07 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.013G154500 [exp] 51 / 3e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037678 [exp] 492 / 1e-167 AT1G72650 341 / 2e-109 TRF-like 6 (.1.2) Lus10015664 [exp] 475 / 2e-160 AT1G72650 335 / 9e-107 TRF-like 6 (.1.2) Lus10013809 [exp] 86 / 1e-19 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 88 / 5e-18 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2) Lus10000947 [exp] 59 / 7e-09 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 59 / 8e-09 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10002704 [exp] 59 / 1e-08 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10010844 [exp] 59 / 1e-08 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10040285 [exp] 57 / 3e-08 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10020771 [exp] 55 / 2e-07 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G170200.1 pacid=42791594 polypeptide=Potri.001G170200.1.p locus=Potri.001G170200 ID=Potri.001G170200.1.v4.1 annot-version=v4.1 ATGGAAACAGAGGTTGGAGTTGAGGGGAATGATGAAGCTAAGCATAAGGAGTGTGGGATTCGGAAAAGTTCCTCTTCCTTGTCTTCTCCCAAACAGATTT CCGACCCAGTTGTATACAAGCTTGTTCGGGTGGAAGGAGATGGGAGATTAGTGCCTGCAACAGATGATGAATTAATGGAGGTTGAGAGTCTGCTTATAGA TGACAGATGTGGAAAGCATGTTGTTGCAGACCCTGGGCAGACTGTAGGGTGCATTTCCAATGAAGGATCTTCCTCTGGGATGGCCCAGTTAAAAAGACTG GAAGGTTGGTCACAACCCGAGAACAAAAAAGTTGATCCAGATAAATTGAATGGAAGGCTTGAGTACATTGAGGAGATGTTGCAAAAGGTGAAAGAGGAAG AGAGGCTCTACATAGCATGTGGATCTCCTGATTGTTCTTCTGCTTATGTGATTGTAGACAGCCAGTGTTCTGATCCGCATGATAAATTGCTCCATATTGA TGAGAAACTCCAATGTGAAATTCCCTTGCAGGAACCTGTTCCTTTACTGGCACCAAGTTTGAGTGAAAGCCATTTGAATCAATCTGGGAGTGTTGGGGAG TGCTCTCATCCTCCAGATGAACTGGTAGCTGGTGGGTCACCTTCGTCTATTACTACAAAACCTGATTTTTCCAGATTGAAGGGGGAAATATGCCTAGACA ATCTGTCAATAAAAGAACTTCATGAAACTTTTAAAGCAACATTTGGGCGAGAAACTACTGTCAAAGATAAGCAATGGCTTAAGAGGAGGATTTCCATGGG GTTGACAAATTCTTGTGATGTTTCAACAACTTCTTTTATAATTAAAGGTAATAAATTTGTTAAGAAAGGGAATGAAGAAGGCTGTAATGGTATTTATGGT TCCTTTGCTAAGGATCCACCAATTGTCAACCAGAAAGGCTTACCAACTTGCCATGTTGGCCAACTGGATTATCATAAAGTTGTTCCTGAAAGAAGATTGG AAAATCACAACTTAGATGACAATTCTGGAAGTGATGATCATCAAAAAGAACAGAGAGCTGCTAAAAGAGTACGGAAGCCCACAAAGCGATATATTGAAGA ACTTTCAGAAGTGGAGTCCAAAGAGTCCAACGAAAGGTTATTGAATTTGGCTAAAAATTCTGGACATGATGGACTGATATCCCCAAAATCTCATGTTAGG CTTGTTAGACATGTTTCTTCAGGAGGAAGAACTGTTATCACACGGCTGGATTCCCTTGGAGGATCTGGGATTCAGGTTCCATGTGTTTCTCGGGTCCGAA GAAGCCGTCCAAGGAAAAATTTCATGGCTCTTCTGAAATTCAATCCAAGTAGCATGGGCATGGCAGCTGCATTGGTAGAGAAAGCCCTTGATGATCATGG TTTTCCACCAGATGATGGGAATGAGAACAGAGTCTTGAAAGCCAGCTCTACCCCTGAACATGTTCATCACCAGTTTGTAGGAGTGCCAGAGAAAGACAAG CAGTTCTCAGTGATGAGTGTGGTTGGCTTGGGAAATAACACGGATCTGAAATGCATGAATTCAAATGAGGATTCAGATGACAATGTAGTTACTGTTCCTA CATCCAAAGGTGGAATTAGAAGGAAACATCATCGAGCTTGGACTCTCTCTGAGGTGATGAAGCTAGTTGAGGGGGTCTCCAGGTATGGAGCTGGAAGGTG GTCCGAGATCAAACGACTCGCCTTTGCATCTTATTCATACCGCACCTCTGTTGATCTCAAGGACAAGTGGAGGAATCTGCTGAAAGCGAGCTTTGCACAG ACACCTCCAGATACTGGGATGAATTCCCGGAAAAATACCGGTGCAATGCCCATTCCCACACCAATTTTGTTAAAAGTGAGAGAGCTCGCAGAGATGCAAG CACAGGTTCCGCCAAATCTTAGCTTGACCAAGGTGGCCGGGAGTGCTAGGAAAATTGTACATGAAAAACAAACAGGGTTCTTGTAG
AA sequence Show only first row Show all	>Potri.001G170200.1 pacid=42791594 polypeptide=Potri.001G170200.1.p locus=Potri.001G170200 ID=Potri.001G170200.1.v4.1 annot-version=v4.1 METEVGVEGNDEAKHKECGIRKSSSSLSSPKQISDPVVYKLVRVEGDGRLVPATDDELMEVESLLIDDRCGKHVVADPGQTVGCISNEGSSSGMAQLKRL EGWSQPENKKVDPDKLNGRLEYIEEMLQKVKEEERLYIACGSPDCSSAYVIVDSQCSDPHDKLLHIDEKLQCEIPLQEPVPLLAPSLSESHLNQSGSVGE CSHPPDELVAGGSPSSITTKPDFSRLKGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRISMGLTNSCDVSTTSFIIKGNKFVKKGNEEGCNGIYG SFAKDPPIVNQKGLPTCHVGQLDYHKVVPERRLENHNLDDNSGSDDHQKEQRAAKRVRKPTKRYIEELSEVESKESNERLLNLAKNSGHDGLISPKSHVR LVRHVSSGGRTVITRLDSLGGSGIQVPCVSRVRRSRPRKNFMALLKFNPSSMGMAAALVEKALDDHGFPPDDGNENRVLKASSTPEHVHHQFVGVPEKDK QFSVMSVVGLGNNTDLKCMNSNEDSDDNVVTVPTSKGGIRRKHHRAWTLSEVMKLVEGVSRYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASFAQ TPPDTGMNSRKNTGAMPIPTPILLKVRELAEMQAQVPPNLSLTKVAGSARKIVHEKQTGFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	0	1
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	1.00	0.8922
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	1.41	0.8915
AT1G09730			Cysteine proteinases superfami...		Potri.007G115400 [exp]	2.44	0.8737
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	2.82	0.8651
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227600 [exp]	3.16	0.8600
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G010400 [exp]	4.24	0.8370
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	6.16	0.8324
AT5G06810			Mitochondrial transcription te...		Potri.016G048400 [exp]	7.48	0.8402
AT5G46250			RNA-binding protein (.1.2.3)		Potri.011G080700 [exp]	8.77	0.8475
AT5G20610			unknown protein		Potri.006G145500 [exp]	9.16	0.8538

Compare expression of checked genes

Potri.001G170200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.