Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DRG1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72660 677 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G17470 675 / 0 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT4G39520 391 / 5e-135 GTP-binding protein-related (.1) AT5G18570 63 / 2e-10 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 59 / 2e-09 GTP-binding protein Obg/CgtA (.1) AT1G56050 50 / 2e-06 GTP-binding protein-related (.1) AT1G30580 49 / 3e-06 GTP binding (.1) AT1G50920 48 / 9e-06 Nucleolar GTP-binding protein (.1) AT1G80770 45 / 5e-05 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G66470 44 / 0.0002 RNA binding;GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063500 [exp] 712 / 0 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G080900 [exp] 398 / 1e-137 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.010G022400 [exp] 62 / 3e-10 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 60 / 1e-09 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 56 / 2e-08 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.011G164000 [exp] 50 / 2e-06 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G465900 [exp] 49 / 3e-06 AT1G30580 681 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 49 / 4e-06 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.001G258900 [exp] 49 / 7e-06 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015662 [exp] 701 / 0 AT1G72660 760 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10037676 [exp] 697 / 0 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10005800 [exp] 396 / 7e-137 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 379 / 4e-129 AT4G39520 655 / 0.0 GTP-binding protein-related (.1) Lus10034166 [exp] 63 / 2e-10 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 62 / 3e-10 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 59 / 2e-09 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 55 / 7e-08 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 52 / 4e-07 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10038748 [exp] 50 / 2e-06 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0072 [poplar] [flax] Ubiquitin PF02824 [poplar] [flax] TGS TGS domain CL0072 [poplar] [flax] PF16897 [poplar] [flax] MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain
Representative CDS sequence Show only first row Show all	>Potri.001G170300.3 pacid=42793297 polypeptide=Potri.001G170300.3.p locus=Potri.001G170300 ID=Potri.001G170300.3.v4.1 annot-version=v4.1 ATGGGGATCATAGAGAGGATTAAAGAAATCGAAGCAGAGATGGCTCGTACCCAGAAAAATAAAGCCACAGAGTATCATCTTGGTCAGCTCAAGGCAAAGA TAGCAAAGCTAAGGACACAATTATTGGAGCCTCCTAAAGGTTCTAGTGGAGCTGGAGATGGTTTTGAAGTTACAAAATTTGGCCATGGACGTGTTGCACT TATTGGATTTCCAAGTGTGGGGAAGTCGACACTTTTAACAATGTTGACAGGCACACATTCAGAAGCTGCATCATATGAGTTCACAACACTTACCTGTATT CCTGGGATTATACATTATAATGATACCAAAATTCAGCTGCTTGACCTTCCTGGGATTATTGAAGGTGCTTCTGAAGGCAAGGGACGTGGGAGACAGGTTA TTGCTGTTTCCAAGTCTTCAGACATAGTGTTGATGGTTCTTGATGCCTCAAAAAGTGAGGGTCATCGACAGATATTAACAAAGGAACTAGAATCGGTGGG TTTGCGCTTAAACAAGAAACCACCTCGAATTTATTTCAAGAAGAAAAAAACAGGGGGCATCTCTTTCAACAGCACTTTGCCTCTAACACATGTAGACGAG AAGCTTTGTTATCAGATTCTACACGAATACAAAATTCACAATGCAGAGGTCCTATTTCGTGAGGATGCAACAGTGGATGATCTTATAGATGTGATCGAGG GTAATCGTAAATACATGAAGTGCATATATGTCTATAACAAGATAGATGTTATAGGTATTGATGATGTGGACAAGTTAGCTCGCCAGCCAAACTCTGTGGT CATTAGCTGCAATTTAAAGCTCAACTTTGACAGACTACTTGCAAAAATGTGGGAAGAAATGGGGCTCGTGAGAGTCTACACAAAACCACAAGGCCAGCAA CCTGATTTTACTGATCCTGTAGTTCTTTCAACTGATAGAGGCGGGTGCATGGTTGAAGACTTCTGCAATCACATACACAGAAATTTAATCAAGGATGTGA AGTACGTGCTAGTGTGGGGTACAAGTGCAAGGCACCACCCACAGCACTGTGGCCTTGGTCATTCTCTCCATGACGAGGATATGGTCCAGATTGTTAAGAG AAAGGAAAAGGAAGAGGGAGGAAGGGGTCGGTTCAAATCACATTCAACAGATCCTGCTCGCATATCTGACAGAGAGAAGAAAGCTCCATTGAAGACATAA
AA sequence Show only first row Show all	>Potri.001G170300.3 pacid=42793297 polypeptide=Potri.001G170300.3.p locus=Potri.001G170300 ID=Potri.001G170300.3.v4.1 annot-version=v4.1 MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGDGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCI PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELESVGLRLNKKPPRIYFKKKKTGGISFNSTLPLTHVDE KLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCIYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNFDRLLAKMWEEMGLVRVYTKPQGQQ PDFTDPVVLSTDRGGCMVEDFCNHIHRNLIKDVKYVLVWGTSARHHPQHCGLGHSLHDEDMVQIVKRKEKEEGGRGRFKSHSTDPARISDREKKAPLKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72660			P-loop containing nucleoside t...		Potri.001G170300 [exp]	0	1	Pt-DRG1.1
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	6.32	0.8716	HMGB901,Pt-HMGB3.2
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	7.48	0.8656
AT4G01880			methyltransferases (.1)		Potri.002G189800 [exp]	9.38	0.7657
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	11.48	0.8308
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.014G134900 [exp]	14.86	0.7948	NHX1.2
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.018G009200 [exp]	15.29	0.8207	Pt-ATCNGC14.1
AT2G43180			Phosphoenolpyruvate carboxylas...		Potri.002G231000 [exp]	18.97	0.8546
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	19.59	0.7813
AT3G54000			unknown protein		Potri.006G093000 [exp]	20.61	0.8242
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G067400 [exp]	25.82	0.7770

Compare expression of checked genes

Potri.001G170300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.