Plant FIBer expression Database

Potri.001G170500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54200 167 / 2e-47 unknown protein
AT3G13980 141 / 6e-38 unknown protein
AT3G42800 92 / 2e-20 unknown protein
AT5G12050 52 / 3e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G063400
[exp]
627 / 0 AT1G54200 173 / 7e-50 unknown protein
Potri.006G222700
[exp]
291 / 8e-94 AT1G54200 114 / 4e-28 unknown protein
Potri.018G049900
[exp]
289 / 4e-93 AT1G54200 122 / 5e-31 unknown protein
Potri.006G144700
[exp]
166 / 9e-47 AT3G13980 130 / 2e-34 unknown protein
Potri.018G065000
[exp]
158 / 9e-44 AT3G42800 139 / 1e-37 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037659
[exp]
164 / 3e-46 AT3G13980 193 / 9e-59 unknown protein
Lus10008457
[exp]
161 / 3e-45 AT3G13980 151 / 1e-42 unknown protein
Lus10025011
[exp]
130 / 3e-33 AT3G13980 115 / 1e-28 unknown protein
Lus10026463
[exp]
117 / 1e-28 AT1G54200 107 / 7e-26 unknown protein
Lus10015641
[exp]
109 / 1e-26 AT3G13980 176 / 3e-52 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G170500.2 pacid=42789926 polypeptide=Potri.001G170500.2.p locus=Potri.001G170500 ID=Potri.001G170500.2.v4.1 annot-version=v4.1
ATGGATAGATGGGAGAAACCACTAAGAGATGATAGGTATAGACACCAAAGGCAGAACCCATCTTTCTCCTCTACTCTTCTTGATGTTATCTACCGTTCCA
TAGATGAGTCTGGCAATGGCAAAGGAGAAGAAGAGCAGCTGATTTTCTACAGAGAAACCATGAGAAAGAAACATGAGATCAATCATGGCTTTAAAGGTGA
AGAAATGACAAGTTTGCAAAGAGCATGCATGATAGAGAAGTGGATGGAGAAGAAAGTTAGCCATGAGAAGGTCTCCGTTAGGAGAAAATCCATGGCTGAT
TTCGACAAGAAATCTCGAAAAGATCTAGATTCTGTGCTGTTAAATTCAAGCTCGAGTTCCTCAGAATCTAGCTGTGGTGGTGTTTTTTCATCTTCAGAAT
CCGAATCAATTTATGGTGTCAACTCATCAAGATCATCAACAACTAGTTACACCATGCAAAGGCCTAAGCCTGTCAGAACCAGCATTTCTGCTAGGCCAGA
GAAATACCAAAGACGTGAAGATCTTCATCAAACCGATACGTTTCAACATCATGAGAGGAATTACGCACCAAACCAGAAGGCAAAACCTGAAGGCAGTTTT
GTCAAGACAAAATCAAAGGCCTTAAAGATTTATGGTGATCTCAAGAAGGTCAAGCAGCCTATATCGCCTGGCCGCAGGCTTGCGAGCTTTCTTAACTCTC
TTTTCACTACAGGCAATGCAAAGAAGGCCAAGATTACGACGCCGGGTGGAAGTTACGAAGAGCGGAAGTTAAAGTCTGAGCAAGCATCTACATGCTCTTC
AGCCTCTTCATTTTCAAGGTCTTGCTTGAGCAAAACCCCTTCTTCAAGAGGTGGGAAATTGAGTAGCAACAATGGAGCCAAAAGGTCAGTGAGGTTCTAT
CCTGTTAGTGTGATTGTTGATGAAGATTGTAGGCCTTGTGGGCATAAGAATCTATATGGAAGTGATCGTCAAGAGATGAGTAGTACTTTAGTGGCAGCTG
CAGTTACAACTGCTACAAGAAACAACTGTCCCACAAGTGATGAAGAGCTTAAGTTGCATGTCATGAATGAAAATCGCCGAATCGAGGAAGTTGCAAGGGA
TCTCTTAAAGAACTATCAAAAGAAGAAGGAAGAGCAGTTTGATCATATGAGTACTGATCTTTGCAATGACAATACTCATCAAGTGTGTAGTGAGGAAGAG
GAAGAAGAATCTGATGACGATGATGATATAGCAAGTTGTGCAAGTTCTGATTTGTTTGAATTAGATAATCTTTCTGTTGTTGGAATAGAGAGGTATAGAG
AAGAATTGCCTGTGTATGAAACAACTCATCTGGGTACTAATCGAGCCATTGCTAATGGCTTATTCCTGTAA
AA sequence
>Potri.001G170500.2 pacid=42789926 polypeptide=Potri.001G170500.2.p locus=Potri.001G170500 ID=Potri.001G170500.2.v4.1 annot-version=v4.1
MDRWEKPLRDDRYRHQRQNPSFSSTLLDVIYRSIDESGNGKGEEEQLIFYRETMRKKHEINHGFKGEEMTSLQRACMIEKWMEKKVSHEKVSVRRKSMAD
FDKKSRKDLDSVLLNSSSSSSESSCGGVFSSSESESIYGVNSSRSSTTSYTMQRPKPVRTSISARPEKYQRREDLHQTDTFQHHERNYAPNQKAKPEGSF
VKTKSKALKIYGDLKKVKQPISPGRRLASFLNSLFTTGNAKKAKITTPGGSYEERKLKSEQASTCSSASSFSRSCLSKTPSSRGGKLSSNNGAKRSVRFY
PVSVIVDEDCRPCGHKNLYGSDRQEMSSTLVAAAVTTATRNNCPTSDEELKLHVMNENRRIEEVARDLLKNYQKKKEEQFDHMSTDLCNDNTHQVCSEEE
EEESDDDDDIASCASSDLFELDNLSVVGIERYREELPVYETTHLGTNRAIANGLFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54200 unknown protein Potri.001G170500
[exp]
0 1
AT2G23970 Class I glutamine amidotransfe... Potri.009G078200
[exp]
1.00 0.8463
AT3G61220 SDR1 short-chain dehydrogenase/redu... Potri.004G235500
[exp]
4.24 0.7497
AT5G63380 AMP-dependent synthetase and l... Potri.017G033600
[exp]
7.41 0.7413
AT1G76520 Auxin efflux carrier family pr... Potri.003G108100
[exp]
11.22 0.6927
AT2G33170 Leucine-rich repeat receptor-l... Potri.001G053400
[exp]
11.31 0.7363
AT5G14940 Major facilitator superfamily ... Potri.004G068500
[exp]
11.74 0.7394
AT1G18400 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) Potri.015G046300
[exp]
12.16 0.6338
AT5G24910 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P... Potri.010G116300
[exp]
12.48 0.6506
AT1G24625 C2H2ZnF ZFP7 zinc finger protein 7 (.1) Potri.009G093300
[exp]
14.24 0.7377
AT3G08860 PYD4 PYRIMIDINE 4 (.1) Potri.006G106800
[exp]
14.86 0.6771

Potri.001G170500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.