Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATPDAT.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13640 1055 / 0 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 793 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT1G04010 88 / 8e-18 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT1G27480 47 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063100 [exp] 1247 / 0 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 839 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.009G150800 [exp] 224 / 1e-69 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1) Potri.014G195500 [exp] 86 / 4e-17 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.015G121000 [exp] 56 / 6e-08 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 52 / 1e-06 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 49 / 1e-05 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.014G014400 [exp] 46 / 8e-05 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015639 [exp] 1088 / 0 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 1074 / 0 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 1004 / 0 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 1001 / 0 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 835 / 0 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043360 [exp] 509 / 1e-176 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043361 [exp] 85 / 2e-19 AT5G13640 85 / 4e-20 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10024927 [exp] 84 / 2e-16 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10003615 [exp] 82 / 6e-16 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10008234 [exp] 82 / 7e-16 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02450 [poplar] [flax] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G171000.1 pacid=42790564 polypeptide=Potri.001G171000.1.p locus=Potri.001G171000 ID=Potri.001G171000.1.v4.1 annot-version=v4.1 ATGGCCTCTATTCGTCGCCGAAAACCCGTCGAACCCAGGAACACCTCAGTACAAAAAGAGGAGGAGGACGAGGAGGAAGAAGTAGAGGAGGACTATAGCA AAAACAAACACCGTAGGAAGAGTGACAAAAAATCCAAACCAAAATGGTCATGTGTAGACAACTGTTGTTGGATTGTTGGGTGCATATGCGTAACCTGGTG GACTTTATTGTTTCTTTACAACGTTATGCCTGCTTCTCTCCCTCAATATGTGACTGAGGCAATCACTGGTCCTTTGCCTGATCCACCTGGTGTAAAGTTG AGGAAAGAAGGACTCAAGGCAAAACATCCTGTGGTTTTTGTTCCTGGAATTGTAACTGCAGGGCTTGAGCTGTGGGAAGGGCATCAGTGTGCTGACGGGT TGTTTAGGAAAAGGCTTTGGGGTGGAACTTTCGGTGAAGTGTATAAAAGGCCTCTCTGCTGGGTAGAACATATGTCTCTAGACAATGAAACTGGATTGGA TCCTCCTGGTATAAGGGTCAGGCCTGTCTGTGGACTTGTGGCAGCCGATTACTTTGCTCCGGGATATTTTGTTTGGGCAGTTTTGATTGCTAATTTGGCA CGCATTGGATATGAGGAGAAGACAATGTACATGGCATCATATGACTGGAGACTTTCATTTCAGAACACTGAGGTTCGTGACCAAACATTAAGCCGCATCA AGAGTAGTATTGAACTTATGGCTGAAGCAAATGGTGGAAACAAGGCTGTTATTATACCACATTCCATGGGTGTTTTGTACTTTCTGCATTTTATGAAGTG GGTGGAGGCACCAGCTCCAATGGGTGGCGGGGGTGGTCCAAATTGGTGTGCTAAGCATATCAAGGCAGTGATTAATATTGGTGGACCTTTTTTAGGTGTT CCAAAAGCTGTTGCTGGTCTTTTCTCTGCTGAAGCGAGGGATATTGCAGTTGCCAGGGCTATTGCACCTGGTGTCTTGAACAATGGCTTTCAGACAATGC AACATATAATGAGAATGTCTCGCACATGGGATTCAACCATGTCAATGATTCCTAAAGGTGGAGACACTATTTGGGGTGATCTTGATTGGTCGCCTGAGGA AGGATATACTCCTATGAAGAGTAAGCAAAGAAATACTGACACCCAGAAAGCAAGCCAAGATGGCCCTGAAAGTGAGATCTCTCAAACAAAGAGAGCTAAT TATGGAAGGATCATATCATTTGGGAAAGATGTAGCTGAGGCACTTTCATCTGACATTGAGAGGATTGACTTCAGGGATGCTGTTAAAGGCCAAAGTGTTG CAAACACCTCCTGTCGCGATGTGTGGACAGAGTACCATGACATGGGATTTGGAGGTATTAAAGCTGTTGCAGAATATAAGGTTTATACTGCTGAATCTAT GATAGATCTGCTGCGCTTTGTTGCCCCAAAGATGATGGAGCGTGGCAGTGCTCATTTCTCTTATGGAATTGCTGACAATTTGGATGATCCAAAATACCAG CACTACAAATATTGGTCAAACCCCTTGGAGACAAAATTGCCCAATGCCCCAGAAATGGAGATTTTTTCCCTGTATGGAGTGGGCGTACCAACTGAAAGAG CTTATGTTTACAAGTTATCTCCTTCAGCCGAGTGCGCTATTCCATTTCAGATTGATACGTCAGCTGATGAACAAGATGAAGACAGCTGTCTGAAAGGTGG AGTCTATTCTGTTGATGGGGATGAGACTGTTCCTGTTTTAAGTTCAGGTTTAATGTGTGCTAAAGTTTGGCGTGGGAAAACGAGGTTCAATCCTTCAGGA AGTCGAACGTACATTAGAGAGTATGCTCATTCTCCTCCGGCAAACTTCTTAGAAGGCCGGGGCACCCAAAGTGGTGCTCATGTTGATATAATGGGAAACT TTGCTTTGATTGAGGATGTAATGAGAGTGGCAGCTGGTGCTACAGGAGAAGAATTGGGGGGAGATCAAGTTTATTCAGATATATTTAAGTGGTCTGAGAA GGTCAACCTACAACTGTGA
AA sequence Show only first row Show all	>Potri.001G171000.1 pacid=42790564 polypeptide=Potri.001G171000.1.p locus=Potri.001G171000 ID=Potri.001G171000.1.v4.1 annot-version=v4.1 MASIRRRKPVEPRNTSVQKEEEDEEEEVEEDYSKNKHRRKSDKKSKPKWSCVDNCCWIVGCICVTWWTLLFLYNVMPASLPQYVTEAITGPLPDPPGVKL RKEGLKAKHPVVFVPGIVTAGLELWEGHQCADGLFRKRLWGGTFGEVYKRPLCWVEHMSLDNETGLDPPGIRVRPVCGLVAADYFAPGYFVWAVLIANLA RIGYEEKTMYMASYDWRLSFQNTEVRDQTLSRIKSSIELMAEANGGNKAVIIPHSMGVLYFLHFMKWVEAPAPMGGGGGPNWCAKHIKAVINIGGPFLGV PKAVAGLFSAEARDIAVARAIAPGVLNNGFQTMQHIMRMSRTWDSTMSMIPKGGDTIWGDLDWSPEEGYTPMKSKQRNTDTQKASQDGPESEISQTKRAN YGRIISFGKDVAEALSSDIERIDFRDAVKGQSVANTSCRDVWTEYHDMGFGGIKAVAEYKVYTAESMIDLLRFVAPKMMERGSAHFSYGIADNLDDPKYQ HYKYWSNPLETKLPNAPEMEIFSLYGVGVPTERAYVYKLSPSAECAIPFQIDTSADEQDEDSCLKGGVYSVDGDETVPVLSSGLMCAKVWRGKTRFNPSG SRTYIREYAHSPPANFLEGRGTQSGAHVDIMGNFALIEDVMRVAAGATGEELGGDQVYSDIFKWSEKVNLQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	0	1	Pt-ATPDAT.2
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	3.16	0.8305	WNK8.2
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	3.46	0.8489
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.006G268000 [exp]	4.00	0.8347
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	4.47	0.8165
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.014G151200 [exp]	5.38	0.8588	TXR1.1
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	6.00	0.8281
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.014G106200 [exp]	9.16	0.8244	Pt-MTP1.1
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	9.74	0.8512	Pt-LEN1.1
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	10.09	0.8520
AT3G14200			Chaperone DnaJ-domain superfam...		Potri.001G164700 [exp]	11.83	0.8375

Compare expression of checked genes

Potri.001G171000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.