Plant FIBer expression Database

Potri.001G171100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14010 298 / 9e-93 CID4 CTC-interacting domain 4 (.1.2.3.4)
AT1G54170 270 / 4e-82 CID3 CTC-interacting domain 3 (.1)
AT5G54920 62 / 5e-10 unknown protein
AT4G26990 56 / 6e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G063000
[exp]
914 / 0 AT3G14010 322 / 9e-102 CTC-interacting domain 4 (.1.2.3.4)
Potri.011G138600
[exp]
72 / 4e-13 AT5G54920 148 / 1e-38 unknown protein
Potri.001G423200
[exp]
70 / 2e-12 AT5G54920 253 / 3e-77 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037656
[exp]
479 / 3e-161 AT3G14010 357 / 1e-114 CTC-interacting domain 4 (.1.2.3.4)
Lus10015638
[exp]
409 / 3e-136 AT3G14010 294 / 2e-92 CTC-interacting domain 4 (.1.2.3.4)
Lus10040755
[exp]
66 / 4e-11 AT5G54920 269 / 6e-84 unknown protein
Lus10016477
[exp]
62 / 9e-10 AT5G54920 271 / 5e-85 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06741 LsmAD LsmAD domain
CL0527 Sm-like PF14438 SM-ATX Ataxin 2 SM domain
Representative CDS sequence
>Potri.001G171100.1 pacid=42789924 polypeptide=Potri.001G171100.1.p locus=Potri.001G171100 ID=Potri.001G171100.1.v4.1 annot-version=v4.1
ATGAATTTGCAACAGGCTATGCAGCCCAAATCTTCTGCTAATGGTTTTGGTCGTCGGAGAACTGAAAAAGATTGGGGGACAAGGTTTGAAAATAAGGTGC
AATCTGGAAAAGCACACACCAATAGACCGAGTAATGCAGGTGCAACGGGAAAAGTTGGAGTTTGCGAGAGTCCTTTGCGTGATCGGCTAGTATATTTAAC
AACCTGTCTTATTGGCCATCCCGTGGAGGTCCAGCTGAAAAATGGATCTGTATATTCTGGAACATGTTACACAACAAATGCTGAAAAGGAATTTGCAATA
ATTTTGAAAATGGCTCGCTTGATAAAGGATGTTTCTCTCCGAGGCCCAAAGGCAGAGTGTGTCAGCAAGGCTCCATCAAAGACTTTGATTTTACCTGGAA
AAGAAGTTGTACAAGTTATTGCGAAGGATGTCTCTGTTACCATAGATGGGATGTCCAATGAGCTCCAACAAGCAAAGCAGCAAGAAATTATGATCGACTC
CTTTATATCACAGTCACGACTTGTTGAAACAGAGAGAGAGCTGGAACCTTGGGTCCCTGACGAAGACGAGCTACAATGCCCTGAATTAGAGAACATATTT
GACGGCCATTGGAATAGGGGCTGGGATCAATTTGAAACAAATGAAATGTTGTTTGGCGTAAAAAGCACCTTTGACGAGGAACTTTATACAACAAAGCTGG
AGAGGGGTCCTCAGACGAAAGACATGGAAAGGGAAGCATTGAGGATAGCAAGAGAGATCGAGGGTGAGGAAACAAGAGACCTTCACTTAGCAGAGGAAAG
AGGCATCCATCTTCATGAAAGTTTTGAGGTTGATGAGGAGACCCGATTCTCTTCAGTCTATAGAGGTGGAGCCATTGATGATGGTGGGCATGAAGAACTT
GATGATGTAGTGTTGAGTTCTCTCAACAGTGAAACTTTTGGAGGGCCATCTGCCTCTTCCATTAAGAAGTCTGCTGATTTGACCCATGCAAAAAGCAATG
TTGGGACTCGAGTGTTATCAACCTCTTCCTTGGATGAGGTACAATGTTCTCAATCAAGCACTTGTGCAGATTTGCATCATCCAGGATCTCATGATCATGC
TGCAAAGCTGGCATCAGAACCTCCTACTAGTTTGTCCACTTCAGATAGTGAAAGCAGGGCCCAAGAGGATCGACATTTTGAACATGGAGAACTTGACAGC
ATTAAGGAGCGTGTAGAAGAGAAGATGCTAACTGAGGATGCTCAATTATCAAAAGGTAAGGATTCTAAGTCATTGGATGACAAGAAAAATGAATCTGATA
AAGGGAGGCTATCCTCTAATACCACTGCATATACCCCTTCATCCCATGTCTTTTCAAAAAATAACAAAAAGACTAGTTCCCCTGGCCAACTGTTAGATGG
TGTGGCATCAGCCAAGGGAGCTGTAGAAATGCAGCCAGTAAACTCTCGTGGACGACCTGGCAGTTCCGCATCATCAAATTCTGACCGTGCAGGTGCCTTG
CCAGCTTCTAGTGGTCCTGGTTTATCACCAAGCTCATCAATGGGTTCATTATCTTCTGAGAAGTCAACGTTAAATCCCCATGCCAAGGAATTTAAACTTA
ATCCCAACGCCAAGAGTTTCACCCCTTGTCAAACACCTGCTAGGCCCCCTTCCCCAATGTCAGATGGTTCCTTCTATTTTCAACCTAATCTTTCTGCTCC
ACCACATATGCATGGGATGCCTGTGGGAGTCGGACCTGGACCTTCATTCAATGGGCAACAGCCTGTCATGTTTAATCCTCAGGTTACACCATTGCAAGCT
CCACAAGCATATTTTCATCCAGGTGGACCTCAGTTCGGGCAGCAGATGCTTCTTGGCCACCCTAGGCAAGTCTTGTACATGCCAAGCTACCAACCTGAAA
TGCCATATAAAGGACGCGAGTTTTGA
AA sequence
>Potri.001G171100.1 pacid=42789924 polypeptide=Potri.001G171100.1.p locus=Potri.001G171100 ID=Potri.001G171100.1.v4.1 annot-version=v4.1
MNLQQAMQPKSSANGFGRRRTEKDWGTRFENKVQSGKAHTNRPSNAGATGKVGVCESPLRDRLVYLTTCLIGHPVEVQLKNGSVYSGTCYTTNAEKEFAI
ILKMARLIKDVSLRGPKAECVSKAPSKTLILPGKEVVQVIAKDVSVTIDGMSNELQQAKQQEIMIDSFISQSRLVETERELEPWVPDEDELQCPELENIF
DGHWNRGWDQFETNEMLFGVKSTFDEELYTTKLERGPQTKDMEREALRIAREIEGEETRDLHLAEERGIHLHESFEVDEETRFSSVYRGGAIDDGGHEEL
DDVVLSSLNSETFGGPSASSIKKSADLTHAKSNVGTRVLSTSSLDEVQCSQSSTCADLHHPGSHDHAAKLASEPPTSLSTSDSESRAQEDRHFEHGELDS
IKERVEEKMLTEDAQLSKGKDSKSLDDKKNESDKGRLSSNTTAYTPSSHVFSKNNKKTSSPGQLLDGVASAKGAVEMQPVNSRGRPGSSASSNSDRAGAL
PASSGPGLSPSSSMGSLSSEKSTLNPHAKEFKLNPNAKSFTPCQTPARPPSPMSDGSFYFQPNLSAPPHMHGMPVGVGPGPSFNGQQPVMFNPQVTPLQA
PQAYFHPGGPQFGQQMLLGHPRQVLYMPSYQPEMPYKGREF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.001G171100
[exp]
0 1
AT3G06270 Protein phosphatase 2C family ... Potri.010G028300
[exp]
1.00 0.9166
AT2G46900 unknown protein Potri.002G183500
[exp]
1.73 0.9038
AT4G31770 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHI... Potri.018G015300
[exp]
2.23 0.8854
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Potri.001G109500
[exp]
7.34 0.8196
AT5G61150 VIP4 VERNALIZATION INDEPENDENCE 4, ... Potri.012G065600
[exp]
8.36 0.8545
AT4G24500 hydroxyproline-rich glycoprote... Potri.002G111500
[exp]
9.59 0.8410
AT3G22170 FAR1_related FHY3 far-red elongated hypocotyls 3... Potri.016G018300
[exp]
9.79 0.8555 Pt-FHY3.1
AT1G09710 MYB Homeodomain-like superfamily p... Potri.002G106500
[exp]
9.79 0.8872
AT5G62030 diphthamide synthesis DPH2 fam... Potri.019G041300
[exp]
9.89 0.8639
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Potri.018G083000
[exp]
11.40 0.8550

Potri.001G171100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.