Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52630 303 / 8e-104 O-fucosyltransferase family protein (.1.2) AT5G15740 91 / 4e-21 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 91 / 4e-21 O-fucosyltransferase family protein (.1) AT2G03280 86 / 2e-19 O-fucosyltransferase family protein (.1.2) AT1G14020 83 / 2e-18 O-fucosyltransferase family protein (.1) AT3G54100 81 / 1e-17 O-fucosyltransferase family protein (.1) AT4G24530 80 / 1e-17 O-fucosyltransferase family protein (.1) AT2G37980 79 / 4e-17 O-fucosyltransferase family protein (.1) AT1G22460 78 / 1e-16 O-fucosyltransferase family protein (.1) AT5G01100 77 / 2e-16 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062600 [exp] 352 / 4e-122 AT1G52630 667 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.017G101300 [exp] 89 / 2e-20 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 87 / 4e-20 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 86 / 2e-19 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 83 / 2e-18 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 82 / 2e-18 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 82 / 4e-18 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 81 / 6e-18 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 81 / 6e-18 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036089 [exp] 314 / 6e-107 AT1G52630 677 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10026792 [exp] 310 / 3e-105 AT1G52630 668 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10007975 [exp] 94 / 4e-22 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 93 / 7e-22 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 92 / 2e-21 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 90 / 1e-20 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 88 / 4e-20 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 87 / 9e-20 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 85 / 5e-19 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 84 / 1e-18 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G171500.2 pacid=42787646 polypeptide=Potri.001G171500.2.p locus=Potri.001G171500 ID=Potri.001G171500.2.v4.1 annot-version=v4.1 ATGGTAGCATATAGCCAATGTGAGTACTCAGGCCTTTCTCCTGCCTCCATAGAAGCCATTGAAGCTGCAAGGGGAGACAGAAAACCATGGACTGGGGAGT TGGCTCGTGTTTGGAGAAAACGAGGGAAGTGTCCCTTCACACCTAACGAGACAGCCTTCGTTTTGCAGGCACTTTCCATCCCTACAAACACAAACATGTA TCTTGCAGCTGGGGATGGCCTGGTGGAAATTGAAGGTTTAAAACCCACTTACACCAATGTGGTCACCAAATCTGCACTTCTCAGGGGCGAGGATCTCCTA AATATGCATGGGAACACTAGAGCTGCTTTGGATTATTATGTATTAATCAACAGTGATTCGTACGTGGCCACTTTTTTCAGGAACATGGATAAGATGGTTG CTGCGATGCGAGCTTATGAGGGGTTGCATAATACCCTATTCCTAGGCCGGAGAGCTTATGTAGAGATGACTTCTAAGGGCTTGGATGGGAAGGAGTTGTT GCAAGCCTTATGGGTGGCTCATAAAGAAGATTTTTCCATGGGAAGAGGGTCTGCTCTGCCTGACTGCTTCTGTGAAACTGTGATTTCCTTGTATTTCCTT TTGTACATGATTTGA
AA sequence Show only first row Show all	>Potri.001G171500.2 pacid=42787646 polypeptide=Potri.001G171500.2.p locus=Potri.001G171500 ID=Potri.001G171500.2.v4.1 annot-version=v4.1 MVAYSQCEYSGLSPASIEAIEAARGDRKPWTGELARVWRKRGKCPFTPNETAFVLQALSIPTNTNMYLAAGDGLVEIEGLKPTYTNVVTKSALLRGEDLL NMHGNTRAALDYYVLINSDSYVATFFRNMDKMVAAMRAYEGLHNTLFLGRRAYVEMTSKGLDGKELLQALWVAHKEDFSMGRGSALPDCFCETVISLYFL LYMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52630			O-fucosyltransferase family pr...		Potri.001G171500 [exp]	0	1
					Potri.005G038600 [exp]	4.89	0.8513
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.007G110400 [exp]	8.83	0.8621
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	11.83	0.8392
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.008G061300 [exp]	15.29	0.8319	RAB11.9
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	15.90	0.8164
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	16.06	0.8404	ATKEA4.2
AT3G21710			unknown protein		Potri.002G230300 [exp]	20.19	0.7843
AT1G73240			unknown protein		Potri.003G213050 [exp]	23.43	0.8361
AT2G01818			PLATZ transcription factor fam...		Potri.008G137300 [exp]	25.09	0.8355
AT4G11450			Protein of unknown function (D...		Potri.001G104200 [exp]	30.41	0.8107

Compare expression of checked genes

Potri.001G171500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.