Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PDF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15390 350 / 1e-122 PDF1A, ATDEF1 peptide deformylase 1A (.1) AT5G14660 94 / 9e-23 DEF2, PDF1B, ATDEF2 peptide deformylase 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346700 [exp] 102 / 9e-26 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023133 [exp] 370 / 3e-130 AT1G15390 328 / 1e-113 peptide deformylase 1A (.1) Lus10011493 [exp] 360 / 8e-127 AT1G15390 328 / 2e-114 peptide deformylase 1A (.1) Lus10022255 [exp] 93 / 4e-22 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2) Lus10013086 [exp] 72 / 3e-14 AT5G14660 308 / 3e-105 peptide deformylase 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01327 [poplar] [flax] Pep_deformylase Polypeptide deformylase
Representative CDS sequence Show only first row Show all	>Potri.001G171800.1 pacid=42792344 polypeptide=Potri.001G171800.1.p locus=Potri.001G171800 ID=Potri.001G171800.1.v4.1 annot-version=v4.1 ATGGAGTCTCTCCACCGATGCTCTCTCCGTCTCCTCCCGATTTCACTCGCTGAAAAATGCTTTAAACCCACCACCCTCCCAACGATATTTCGTTTTACCC GAATGCTCGTTCCAAAACCCGAGTTCATGAACCCAAACCCCCACTTCACTACCCGGAAATCTCTCTCTTCCTCTCACACAGCCAAAGCGGGCTGGCTTCT GGGTATGGGAGAAAAGAAGAAAACCAGCTTACCTGATATAGTTAAAGCGGGTGACCCGGTTCTGCACGAGCCCGCCCGGGAAGTTGACCCGAAGGAAATT GGATCGGAGAGGATACAGAAGATAATTGATGATATGGTTAAGGTTATGAGAATGGCTCCTGGTGTTGGTCTTGCTGCTCCTCAGATTGGAATCCCCTTAA GGATCATAGTTTTGGAAGATACAGCAGAATATATTGGTTATGCACCCAAGAATGAGATTAAAGCACAAGACAGGCGCCCTTTTGATCTCTTGGTGATCGT GAACCCAAAGCTTAAGAAGAAGAGCAATAGGACCGCATTCTTTTTTGAGGGGTGTCTGAGTGTTGATGGGTTCAGAGCAATTGTGGAGAGACATCTTGAT GTTGAGGTTATAGGTTTGAGTCGCGATGGCCAGCCTATCAAAGTGGATGCCTCTGGTTGGCAGGCTCGTATCCTACAGCACGAGTGTGATCATTTGGAAG GAACTCTTTATGTTGACAAGATGGTCCCAAGAACATTCAGAACTGTGGAAAATTTGGACTTGCCTCTTGCTGAGGGTTGCCCAGAGCCTGGTTCTCGCTA G
AA sequence Show only first row Show all	>Potri.001G171800.1 pacid=42792344 polypeptide=Potri.001G171800.1.p locus=Potri.001G171800 ID=Potri.001G171800.1.v4.1 annot-version=v4.1 MESLHRCSLRLLPISLAEKCFKPTTLPTIFRFTRMLVPKPEFMNPNPHFTTRKSLSSSHTAKAGWLLGMGEKKKTSLPDIVKAGDPVLHEPAREVDPKEI GSERIQKIIDDMVKVMRMAPGVGLAAPQIGIPLRIIVLEDTAEYIGYAPKNEIKAQDRRPFDLLVIVNPKLKKKSNRTAFFFEGCLSVDGFRAIVERHLD VEVIGLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDKMVPRTFRTVENLDLPLAEGCPEPGSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	0	1	PDF1.2
AT4G18460			D-Tyr-tRNA(Tyr) deacylase fami...		Potri.011G062200 [exp]	1.00	0.8467
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	1.73	0.8347
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.004G212100 [exp]	2.82	0.7685
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	3.46	0.7972
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G161700 [exp]	6.78	0.7349
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	8.06	0.7515
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	8.94	0.7420	TSA1.1
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	9.79	0.7780
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	10.24	0.7505
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	10.95	0.7339

Compare expression of checked genes

Potri.001G171800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.