Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) AT3G07970 342 / 5e-114 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT1G70500 340 / 6e-113 Pectin lyase-like superfamily protein (.1) AT1G23460 338 / 2e-112 Pectin lyase-like superfamily protein (.1) AT3G57510 333 / 1e-110 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 332 / 3e-110 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G56710 303 / 5e-99 Pectin lyase-like superfamily protein (.1) AT1G02460 290 / 3e-93 Pectin lyase-like superfamily protein (.1) AT5G14650 284 / 1e-91 Pectin lyase-like superfamily protein (.1) AT3G26610 278 / 6e-89 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060400 [exp] 372 / 1e-125 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 357 / 8e-120 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 343 / 2e-114 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 340 / 4e-113 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.008G211900 [exp] 340 / 4e-113 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 332 / 1e-109 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 310 / 5e-101 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 306 / 6e-100 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 303 / 6e-98 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036084 [exp] 521 / 0 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10026798 [exp] 377 / 3e-128 AT1G80170 355 / 5e-120 Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 360 / 1e-120 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 346 / 1e-115 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 341 / 3e-113 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 337 / 4e-113 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 319 / 3e-104 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 295 / 5e-96 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 281 / 1e-89 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 280 / 5e-89 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.001G171900.5 pacid=42791464 polypeptide=Potri.001G171900.5.p locus=Potri.001G171900 ID=Potri.001G171900.5.v4.1 annot-version=v4.1 ATGAACAACCTGAGGTTTGGTTCTTGTCCAAAAGGCACTACCACTATACGTGTGCTTATATGTGCATGTTTTGTATGTGTACAAGGATTTGACTCTCTCC TTCAGCTCCCGCAATCCGCGCCAGCAAGAATCCGACCCAGTTCCAAAAGGGTCCTTGTTGTCGGTGATTTTGGTGCAAAAGGAGATGGTCTTAGTAATGA TACTCAGGCTTTCAAAGAAGCTTGGGAGATGGCTTGTTCTTTCCGGGGTCGAACAAGGATTGTAATTCCAGCTGGTTATAATTTTCTGGTCCATCCGGTT GATTTCGGAGGGCCTTGTAAATCAAAGGTCACTCTTGATATCTCTGGTACGATTGTTGCTCCTGAAGACCCTGCTGCTTGGAAAGGTTTAAATCATCGCA AGTGGCTCTACTTCCATGGGGTAAAGCACCTTACAGTAGAAGGGGGAGGAACTGTCAATGGTAGGGGATGGTTATGGTGGGCTCAGTCTTGCAAGATCAA CAAAACCAATCCATGCCGAAATGCTCCAACGGCCATTACTTTCCACAAGTGCAAGGATTTGAAAGTCGAGAATCTTAAGGTGGTCTGTGGTCAAAAGATG CACGTAGCATTCACTAATTGTCTCAGGGTTATGACTTTCAATCTTATAGTGACATCACCTGCTGTTAGCCCCAATACTGATGGAATCCACATCAGTGCAT CCCATGGAGTAAAGATCAAGGATAGTGTTGTTAGAACAGGAGATGATTGCATCTCTATAGTCAGCAACTCTTCACGAATCAAAATCAGAAACATTGCCTG TGGGCCAGGCCATGGTATAAGCATTGGGAGCTTGGGGAAATCAAACTCATCATCATTGGTGCGGGATGTAATGGTTGATGGAGCTTTCCTTTCCAACACT GATAACGGGGTGCGGATAAAAACATGGCAGGGAGGTGGTGGTAATGCCACAAATATCACATTCCAGAACATATTCATGGAAAACGTATCAAATCCAATTA TAATAGATCAGTATTATTGTGATGCACACGTGCCATGTGCAAATCAGACTTCAGCTGTTAAAGTGGAGAATATATCCTTTAGGCGCATCAAAGGAACTTC AGCAACTGAGGAAGCTATAAAATTTGCTTGCAGCGACGACTTACCCTGTAAAGGACTATACTTGGAAGATGTCCAACTTCTGTCACTCACAGGGGGAACG ACAAGGTCTTTTTGTTGGCAAGCTTATGGCTCAAGTCGGGGTCTAGTGCACCCTTCTCCTTGCTTCTCATGCAGCGAAGGCTTCATCAAGGAGAAAGTCC CATCCCACCTCCTTCAGTTTTTTTGA
AA sequence Show only first row Show all	>Potri.001G171900.5 pacid=42791464 polypeptide=Potri.001G171900.5.p locus=Potri.001G171900 ID=Potri.001G171900.5.v4.1 annot-version=v4.1 MNNLRFGSCPKGTTTIRVLICACFVCVQGFDSLLQLPQSAPARIRPSSKRVLVVGDFGAKGDGLSNDTQAFKEAWEMACSFRGRTRIVIPAGYNFLVHPV DFGGPCKSKVTLDISGTIVAPEDPAAWKGLNHRKWLYFHGVKHLTVEGGGTVNGRGWLWWAQSCKINKTNPCRNAPTAITFHKCKDLKVENLKVVCGQKM HVAFTNCLRVMTFNLIVTSPAVSPNTDGIHISASHGVKIKDSVVRTGDDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNT DNGVRIKTWQGGGGNATNITFQNIFMENVSNPIIIDQYYCDAHVPCANQTSAVKVENISFRRIKGTSATEEAIKFACSDDLPCKGLYLEDVQLLSLTGGT TRSFCWQAYGSSRGLVHPSPCFSCSEGFIKEKVPSHLLQFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	0	1
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.004G038100 [exp]	1.00	0.8337
AT1G01300			Eukaryotic aspartyl protease f...		Potri.014G099400 [exp]	1.41	0.8226
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105100 [exp]	3.00	0.8152
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.009G072800 [exp]	3.74	0.7739
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	8.36	0.7541
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	8.94	0.7936
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	10.09	0.7745
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	10.48	0.7885
AT2G22900			Galactosyl transferase GMA12/M...		Potri.007G005900 [exp]	13.07	0.7560	Pt-GT6.1
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	13.41	0.7440

Compare expression of checked genes

Potri.001G171900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.