Plant FIBer expression Database

Potri.001G172400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25970 966 / 0 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1)
AT5G57190 964 / 0 PSD2 phosphatidylserine decarboxylase 2 (.1)
AT4G16700 63 / 4e-10 PSD1 phosphatidylserine decarboxylase 1 (.1)
AT4G12860 42 / 0.0002 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1)
AT5G17470 42 / 0.0004 EF hand calcium-binding protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G061700
[exp]
1178 / 0 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1)
Potri.003G078300
[exp]
57 / 2e-08 AT4G16700 566 / 0.0 phosphatidylserine decarboxylase 1 (.1)
Potri.011G098500
[exp]
46 / 5e-05 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
Potri.017G029700
[exp]
43 / 0.0003 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1)
Potri.012G048200
[exp]
42 / 0.0003 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2)
Potri.014G030700
[exp]
40 / 0.0005 ND /
Potri.001G372000
[exp]
42 / 0.0007 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009324
[exp]
947 / 0 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1)
Lus10010761
[exp]
882 / 0 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1)
Lus10015838
[exp]
596 / 0 AT5G57190 561 / 0.0 phosphatidylserine decarboxylase 2 (.1)
Lus10015839
[exp]
403 / 5e-138 AT4G25970 381 / 4e-130 phosphatidylserine decarboxylase 3 (.1)
Lus10035633
[exp]
407 / 4e-137 AT5G57190 360 / 2e-119 phosphatidylserine decarboxylase 2 (.1)
Lus10007807
[exp]
59 / 8e-09 AT4G16700 515 / 0.0 phosphatidylserine decarboxylase 1 (.1)
Lus10009564
[exp]
43 / 0.0001 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02666 PS_Dcarbxylase Phosphatidylserine decarboxylase
CL0220 EF_hand PF13499 EF-hand_7 EF-hand domain pair
Representative CDS sequence
>Potri.001G172400.2 pacid=42791910 polypeptide=Potri.001G172400.2.p locus=Potri.001G172400 ID=Potri.001G172400.2.v4.1 annot-version=v4.1
ATGGGTCACGGAAGCTCTAAAGAATTGCCTGAAAATACTAATACCGAAGGAGCTTCGACTCCCTCCTCTCGAATTAAACGTCCTCATATCCGTCGCATAT
TCCGTCGCCCTACTGTTTCACGAGGAAATGGAAGCTCCTCCTCCACTCTCAAACTCGTCTCCGCTGAGGATTTCGCTGGAATTGCTCTTCTCACCCTAAT
TAGCGCTGATATGCAGCAATTCAAAGACAAGTGGCTCGCTTGTGTTTCTTTTGGCGAGCAGACTTTCCGTACCCATATTTCCGATCAGACTGAAAAACCT
GTTTGGAACTCGGAAAAGAAACTTCTGTTGGAGAAAAAAGGGCCTCGTCTTGCCAGGATTTCTGTTTTTGAGACCAATAGAATATCGAAGAACAACCTTG
TTGGATATTGTGAGATTGATCTACTTGAACTTCTCACACAGGATTCAGATTCTGACTTTGAAGTGTTTGAACTTTTTGACCCAGCAGCAACTGGTAAAGT
TGTTGGCAGAATTTCTCTGTCATGTTCTGTTGAGGATCCAATTGAAACAGAGAAAAATTTTGCAAGACGCATCTTAGCCATTGTGGATTACAATGAAGAT
GGAAAGCTTTCTTTCTCTGAGTTCTCTGACTTAATTAAGGCTTTTGGCAATCAAGTGGCAGATAACAAGAAAGAGGAGCTTTTTAAAGCTGCTGACAAGA
ATGGGGATGATGCTGTAAGCATGGATGAGTTGGCTGAACTTCTTGCCATTCAACAAGAAAATGAACCTCTTATAAATTGCTGCCCTGTTTGTGGTGAGAT
TCTTGAAGTTTCTGATAAGCTAAATACCCTGGTCCATTTGAGTCTCTGTTTTGACGAGGGAACAGGAAATCAAGTTATGACAGGTGGATTTCTTACTGAT
AAACAGGCTTCTTATGGGTGGATGTTTAAACTGAGTGAATGGGCTCATTTTTCATCATATGATGTTGGTTTGAACTCTGGTTCAAGTGCTTCACATATTC
TGGTATTTGATAGGAAGACAAAGAGGCTAGTGGAAGAGTTAATTGATAAAAAGATTGTTCTGTCAATGAGAGCAATTTATCAGTCAAAGATAGGACTTCA
CCTTATGGACAAAGGAGCAAAGGAAATCCTGCTCAGCATCTCTGAGAAGCAGGGAAGGGAAATGAACACTACAGAATCTGCTAGAGACATTCCAGCGTTT
GTTGAATTTTTCAAGGATCAAATAAATTTGGCTGAAGTGAAGTACCCTTTGGAGCATTTTAAGACATTCAATGAGTTCTTCGTAAGAGAATTAAAGCCTG
GCACAAGACCAGTTGCTTCCATGGAACGTGATGATGTTGCCATATGTGCAGCCGATTGCCGTCTTATGGCTTTTAAGTCGGTAGAAGATGGTCAAAGATT
TTGGATCAAGGGCCGCAAATTTTCTGTACAAGGGCTTTTAGGAAAGGAAACATATTCAAGTGCTTTCGCTGATGGTACTTTGGTGATATTTCGTTTGGCA
CCACAGGATTATCACCGTTTTCATTCTCCAGTTTCTGGAACCATTGAGAAATGTGTAAAGATACCTGGGTGTTTATATACGGTTAATCCTATCGCTGTCA
ACAGCAAGTACTGTAATGTTTTCACTGAGAATAAGAGAGAAGTATCAATTATTTCTACTGCACATTTTGGAAAGGTGGCATTTGTTGCAATAGGAGCAAC
CATGGTTGGCAGCATCACCTTCTCGAAGAAGGCAGGTGACCATGTCAAGAAAGGAGACGAGTATGGATATTTCTCATTTGGTGGAAGCACAGTGATTTGC
GTCTTTGAAAAGGATGCAATTGAAATAGATGAAGACCTTCTAGCAAACAGTGCCAGGTCACTTGAGACCTTAGTTTCTGTTGGAATGAAGTTGGGTGTTG
CAACTAAGAAACAGGCTACAGTTAATCTGCCAAACTTCGATAATTGGGTGTTAGAAGAATGA
AA sequence
>Potri.001G172400.2 pacid=42791910 polypeptide=Potri.001G172400.2.p locus=Potri.001G172400 ID=Potri.001G172400.2.v4.1 annot-version=v4.1
MGHGSSKELPENTNTEGASTPSSRIKRPHIRRIFRRPTVSRGNGSSSSTLKLVSAEDFAGIALLTLISADMQQFKDKWLACVSFGEQTFRTHISDQTEKP
VWNSEKKLLLEKKGPRLARISVFETNRISKNNLVGYCEIDLLELLTQDSDSDFEVFELFDPAATGKVVGRISLSCSVEDPIETEKNFARRILAIVDYNED
GKLSFSEFSDLIKAFGNQVADNKKEELFKAADKNGDDAVSMDELAELLAIQQENEPLINCCPVCGEILEVSDKLNTLVHLSLCFDEGTGNQVMTGGFLTD
KQASYGWMFKLSEWAHFSSYDVGLNSGSSASHILVFDRKTKRLVEELIDKKIVLSMRAIYQSKIGLHLMDKGAKEILLSISEKQGREMNTTESARDIPAF
VEFFKDQINLAEVKYPLEHFKTFNEFFVRELKPGTRPVASMERDDVAICAADCRLMAFKSVEDGQRFWIKGRKFSVQGLLGKETYSSAFADGTLVIFRLA
PQDYHRFHSPVSGTIEKCVKIPGCLYTVNPIAVNSKYCNVFTENKREVSIISTAHFGKVAFVAIGATMVGSITFSKKAGDHVKKGDEYGYFSFGGSTVIC
VFEKDAIEIDEDLLANSARSLETLVSVGMKLGVATKKQATVNLPNFDNWVLEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25970 PSD3, PSD2 phosphatidylserine decarboxyla... Potri.001G172400
[exp]
0 1
Potri.004G011375
[exp]
6.48 0.7713
AT5G24450 Transcription factor IIIC, sub... Potri.017G007200
[exp]
10.09 0.7655
AT5G64560 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) Potri.010G077900
[exp]
12.00 0.7657
AT3G10540 3-phosphoinositide-dependent p... Potri.010G232800
[exp]
14.83 0.7197
AT3G14000 ATBRXL2, BRX-LI... DZC (Disease resistance/zinc f... Potri.001G170800
[exp]
15.36 0.7474
AT1G56130 Leucine-rich repeat transmembr... Potri.006G255100
[exp]
16.73 0.7434
AT5G08110 nucleic acid binding;ATP-depen... Potri.012G063000
[exp]
21.00 0.7264
AT4G04970 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN... Potri.011G052400
[exp]
27.56 0.7289
AT3G55570 unknown protein Potri.001G313700
[exp]
30.33 0.6969
Potri.004G011701
[exp]
31.74 0.7114

Potri.001G172400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.